miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17076 3' -50.8 NC_004333.2 + 11348 0.74 0.483942
Target:  5'- gGCGCGGUUcgUCGucACCu-UGCCGCGCUc -3'
miRNA:   3'- -CGUGUCAA--AGC--UGGuuACGGCGUGAc -5'
17076 3' -50.8 NC_004333.2 + 15614 0.68 0.795918
Target:  5'- uCACGGUUUCGGCgAacgucGUGCCGUugGCg- -3'
miRNA:   3'- cGUGUCAAAGCUGgU-----UACGGCG--UGac -5'
17076 3' -50.8 NC_004333.2 + 21020 0.68 0.815832
Target:  5'- uCACGGg--CGACgAAgugGCCGCGCa- -3'
miRNA:   3'- cGUGUCaaaGCUGgUUa--CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 9999 0.66 0.901111
Target:  5'- uGCGCGGguugUCGGCCGu--CUGCGCg- -3'
miRNA:   3'- -CGUGUCaa--AGCUGGUuacGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 29960 0.71 0.606803
Target:  5'- aGCGC-GUgcCGAgCGcgGCCGCGCUGc -3'
miRNA:   3'- -CGUGuCAaaGCUgGUuaCGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 47472 0.71 0.606803
Target:  5'- cGCGCcGg--CGGCgAcUGCCGCGCUGa -3'
miRNA:   3'- -CGUGuCaaaGCUGgUuACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 25940 0.7 0.682618
Target:  5'- cGCGCGGcgcgaugccggCGGCCAGUacGCgGCGCUGg -3'
miRNA:   3'- -CGUGUCaaa--------GCUGGUUA--CGgCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 2918 0.7 0.687174
Target:  5'- uGCGCAGcggucgUGACCGucaacGUGCCGCugUa -3'
miRNA:   3'- -CGUGUCaaa---GCUGGU-----UACGGCGugAc -5'
17076 3' -50.8 NC_004333.2 + 23455 0.69 0.751784
Target:  5'- cGUAuCGGggUUGACCGcauuguugucgGCCGCGCUGa -3'
miRNA:   3'- -CGU-GUCaaAGCUGGUua---------CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 38658 0.68 0.792864
Target:  5'- gGCACGGgcaagucguacuucgUCGAgCAGcuggccGCCGCGCUGa -3'
miRNA:   3'- -CGUGUCaa-------------AGCUgGUUa-----CGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 32675 0.69 0.764676
Target:  5'- aGCACGGUUUCGA-----GCUGCACg- -3'
miRNA:   3'- -CGUGUCAAAGCUgguuaCGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 23099 0.69 0.732092
Target:  5'- uGCAuCGGUUgcgUCGGCUGAacgGCgGCACUGa -3'
miRNA:   3'- -CGU-GUCAA---AGCUGGUUa--CGgCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 28418 0.72 0.549867
Target:  5'- cGCAacGUgUCGcGCCGGUGUCGCGCUGa -3'
miRNA:   3'- -CGUguCAaAGC-UGGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 1112 0.68 0.775256
Target:  5'- uCGCAGUcgcgcgCGAagUCGGUGCCGUGCUGc -3'
miRNA:   3'- cGUGUCAaa----GCU--GGUUACGGCGUGAC- -5'
17076 3' -50.8 NC_004333.2 + 47256 0.72 0.582746
Target:  5'- aGCACAGUcagccgcuccggaUUCGGCUucUGUCGCGCa- -3'
miRNA:   3'- -CGUGUCA-------------AAGCUGGuuACGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 17209 0.7 0.709801
Target:  5'- uCGCGGg--CGAUCAcUGCCGCuACUGc -3'
miRNA:   3'- cGUGUCaaaGCUGGUuACGGCG-UGAC- -5'
17076 3' -50.8 NC_004333.2 + 24828 0.68 0.785675
Target:  5'- uGCAC-GUUgaaguagaccUCGACCGucggcgGCCGCACg- -3'
miRNA:   3'- -CGUGuCAA----------AGCUGGUua----CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 832 0.68 0.815832
Target:  5'- uGCACuucgacUUGACCuuUGCCGCcCUGg -3'
miRNA:   3'- -CGUGucaa--AGCUGGuuACGGCGuGAC- -5'
17076 3' -50.8 NC_004333.2 + 31611 0.72 0.595328
Target:  5'- aGCGCcGUcUCGGCCGcugugGCCGCGCg- -3'
miRNA:   3'- -CGUGuCAaAGCUGGUua---CGGCGUGac -5'
17076 3' -50.8 NC_004333.2 + 23282 0.71 0.652833
Target:  5'- aGC-CAGgucggcaCGACCAGUGUaagCGCACUGg -3'
miRNA:   3'- -CGuGUCaaa----GCUGGUUACG---GCGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.