Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17077 | 3' | -59.7 | NC_004333.2 | + | 45167 | 0.66 | 0.48039 |
Target: 5'- cGCGCGCUacgucgcggcggacgCGCCggcgagcgucuacGGCauuCCGUUGACGGg -3' miRNA: 3'- cCGUGCGA---------------GUGG-------------CCG---GGCAACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 20326 | 0.66 | 0.477419 |
Target: 5'- -cCAgGCUUGCCGGCC-GUgccGACGGg -3' miRNA: 3'- ccGUgCGAGUGGCCGGgCAa--CUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 42970 | 0.66 | 0.477419 |
Target: 5'- cGCACcCUCGCCGGCggaCGagcgGGCGGc -3' miRNA: 3'- cCGUGcGAGUGGCCGg--GCaa--CUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 38615 | 0.66 | 0.438726 |
Target: 5'- gGGCGCGC-CGCUGcccgugguGCCCGUucUGAuCGGc -3' miRNA: 3'- -CCGUGCGaGUGGC--------CGGGCA--ACU-GCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 45233 | 0.66 | 0.457854 |
Target: 5'- cGCGCaGCUgcagggcuaCAgCGGCaCGUUGACGGUc -3' miRNA: 3'- cCGUG-CGA---------GUgGCCGgGCAACUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 2071 | 0.66 | 0.438726 |
Target: 5'- aGCGCGCaccgCGCuCGGCCaagGUUG-CGGUc -3' miRNA: 3'- cCGUGCGa---GUG-GCCGGg--CAACuGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 27220 | 0.66 | 0.457854 |
Target: 5'- cGCGCGCguuugCGuCCGGCCCcgUGGCGu- -3' miRNA: 3'- cCGUGCGa----GU-GGCCGGGcaACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 32964 | 0.67 | 0.429335 |
Target: 5'- cGGC-CGuCUgACCGGCCUGcUGcCGGc -3' miRNA: 3'- -CCGuGC-GAgUGGCCGGGCaACuGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 27852 | 0.67 | 0.392109 |
Target: 5'- aGCACGUcgcugagcuUCACCGGCCCugcGUUcgaguacGGCGGc -3' miRNA: 3'- cCGUGCG---------AGUGGCCGGG---CAA-------CUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 40790 | 0.67 | 0.384223 |
Target: 5'- aGGCACGCgucaugUCGCuCGcCCCGUcGAUGGa -3' miRNA: 3'- -CCGUGCG------AGUG-GCcGGGCAaCUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 48111 | 0.67 | 0.392109 |
Target: 5'- gGGCGCGCgcaccgCGCCGGCauggugaCCGUcGaAUGGUu -3' miRNA: 3'- -CCGUGCGa-----GUGGCCG-------GGCAaC-UGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 43719 | 0.67 | 0.420063 |
Target: 5'- uGGCaccugACGCgUCGCaacaauGGCCCGcgUUGGCGGg -3' miRNA: 3'- -CCG-----UGCG-AGUGg-----CCGGGC--AACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 1869 | 0.67 | 0.384223 |
Target: 5'- cGGUucugACGCgC-CUGGCCCGgauUGGCGGg -3' miRNA: 3'- -CCG----UGCGaGuGGCCGGGCa--ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 38388 | 0.67 | 0.429335 |
Target: 5'- gGGUGCGCcggcgugaCGCCGGCCaCGgucaaGACGGc -3' miRNA: 3'- -CCGUGCGa-------GUGGCCGG-GCaa---CUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 3216 | 0.67 | 0.410914 |
Target: 5'- cGGCGCGC-CGCCcGcCCCGaUGACGc- -3' miRNA: 3'- -CCGUGCGaGUGGcC-GGGCaACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 35657 | 0.67 | 0.392991 |
Target: 5'- cGGCACGCcugaaCACCgagccggacGGCCCGUaUGcCGGc -3' miRNA: 3'- -CCGUGCGa----GUGG---------CCGGGCA-ACuGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 20880 | 0.67 | 0.420063 |
Target: 5'- uGGC-CGCaucaucgguuUCGCCGGCUCG-UGGCGa- -3' miRNA: 3'- -CCGuGCG----------AGUGGCCGGGCaACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 9605 | 0.68 | 0.373019 |
Target: 5'- cGGCGCGg-CAUCGGCCgGUUGcgcaccggcugccgGCGGc -3' miRNA: 3'- -CCGUGCgaGUGGCCGGgCAAC--------------UGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 5610 | 0.68 | 0.342365 |
Target: 5'- uGGCaacgACGCggauaagGCCGugauGCCCGUUGACGGc -3' miRNA: 3'- -CCG----UGCGag-----UGGC----CGGGCAACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 32713 | 0.68 | 0.367078 |
Target: 5'- cGGCACGCcaagcgCGCCGaucgacCCCGUUGACu-- -3' miRNA: 3'- -CCGUGCGa-----GUGGCc-----GGGCAACUGcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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