Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17077 | 3' | -59.7 | NC_004333.2 | + | 12696 | 1.1 | 0.000313 |
Target: 5'- cGGCACGCUCACCGGCCCGUUGACGGUg -3' miRNA: 3'- -CCGUGCGAGUGGCCGGGCAACUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 23063 | 0.78 | 0.078646 |
Target: 5'- cGCGCcgccguGCUCGCCGuGCCCGgagUGACGGa -3' miRNA: 3'- cCGUG------CGAGUGGC-CGGGCa--ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 22783 | 0.74 | 0.152012 |
Target: 5'- aGGCGCGCUCGCCggauGGCUCGaUGugGu- -3' miRNA: 3'- -CCGUGCGAGUGG----CCGGGCaACugCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 37669 | 0.73 | 0.160365 |
Target: 5'- cGCGCGCccgacccgcucgUCgGCCGGCCCGgcgcgUGGCGGc -3' miRNA: 3'- cCGUGCG------------AG-UGGCCGGGCa----ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 45006 | 0.72 | 0.183081 |
Target: 5'- cGGCGCGCUguCCGGCCgcucgaccgcgCGUggcgcUGGCGGc -3' miRNA: 3'- -CCGUGCGAguGGCCGG-----------GCA-----ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 39492 | 0.72 | 0.192938 |
Target: 5'- cGGCACGUUCGCCGuGCUgaaCGccGACGGc -3' miRNA: 3'- -CCGUGCGAGUGGC-CGG---GCaaCUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 32310 | 0.72 | 0.208595 |
Target: 5'- cGGCuCGCUCGCgGGCUCGcacaaggaagaUGACGGg -3' miRNA: 3'- -CCGuGCGAGUGgCCGGGCa----------ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 10303 | 0.71 | 0.237121 |
Target: 5'- aGGCcgaaGCGCUCACCGGCCuCGggcucGAgucCGGa -3' miRNA: 3'- -CCG----UGCGAGUGGCCGG-GCaa---CU---GCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 13057 | 0.71 | 0.243204 |
Target: 5'- cGGCAUGCUCAUUGGCugCCGguaaUGGCGa- -3' miRNA: 3'- -CCGUGCGAGUGGCCG--GGCa---ACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 47554 | 0.7 | 0.25576 |
Target: 5'- -aCugGCagCACCGGCCCGcUGuCGGg -3' miRNA: 3'- ccGugCGa-GUGGCCGGGCaACuGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 8649 | 0.7 | 0.262235 |
Target: 5'- cGGCGCGg-CGcCCGGCuuGcucgUGACGGUg -3' miRNA: 3'- -CCGUGCgaGU-GGCCGggCa---ACUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 9850 | 0.7 | 0.266846 |
Target: 5'- cGGCACGCccucgaggcgcauuUCGCCGGUcgCCGcgUGcACGGUc -3' miRNA: 3'- -CCGUGCG--------------AGUGGCCG--GGCa-AC-UGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 28557 | 0.7 | 0.282459 |
Target: 5'- cGGcCGCGCUCGCCGcGCUCGccgUGACc-- -3' miRNA: 3'- -CC-GUGCGAGUGGC-CGGGCa--ACUGcca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 25719 | 0.69 | 0.303899 |
Target: 5'- uGGCuuGCUCGCCGGCCagcugcagGcCGGUc -3' miRNA: 3'- -CCGugCGAGUGGCCGGgcaa----CuGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 9028 | 0.69 | 0.326568 |
Target: 5'- cGGCGCGCUCGCUG-CCU-UUGGCGa- -3' miRNA: 3'- -CCGUGCGAGUGGCcGGGcAACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 44382 | 0.69 | 0.326568 |
Target: 5'- uGCGCuGCUCGgCGGCgCGUgcGCGGUa -3' miRNA: 3'- cCGUG-CGAGUgGCCGgGCAacUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 5610 | 0.68 | 0.342365 |
Target: 5'- uGGCaacgACGCggauaagGCCGugauGCCCGUUGACGGc -3' miRNA: 3'- -CCG----UGCGag-----UGGC----CGGGCAACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 17768 | 0.68 | 0.342365 |
Target: 5'- cGGCGCGCgaauUCGGUCCGgcGcCGGUc -3' miRNA: 3'- -CCGUGCGagu-GGCCGGGCaaCuGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 47429 | 0.68 | 0.342365 |
Target: 5'- cGC-CGCUCGCCGGCgccaauCCGUUcGACGc- -3' miRNA: 3'- cCGuGCGAGUGGCCG------GGCAA-CUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 12092 | 0.68 | 0.342365 |
Target: 5'- uGGCGCGCagCGCCGcgucacgggccaGCUCGUcguaucgGACGGUa -3' miRNA: 3'- -CCGUGCGa-GUGGC------------CGGGCAa------CUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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