miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17077 3' -59.7 NC_004333.2 + 11833 0.68 0.358706
Target:  5'- cGGCGCGCUCcagcuugcGCCGGUacaucgcuuCCGUcUGcCGGUc -3'
miRNA:   3'- -CCGUGCGAG--------UGGCCG---------GGCA-ACuGCCA- -5'
17077 3' -59.7 NC_004333.2 + 44975 0.68 0.358706
Target:  5'- cGGCGCGCcgggccggcUCACCGGCCuCGUgcucACGc- -3'
miRNA:   3'- -CCGUGCG---------AGUGGCCGG-GCAac--UGCca -5'
17077 3' -59.7 NC_004333.2 + 29806 0.68 0.350468
Target:  5'- --gACGgUCACCGGgCCGUUGAUGc- -3'
miRNA:   3'- ccgUGCgAGUGGCCgGGCAACUGCca -5'
17077 3' -59.7 NC_004333.2 + 12092 0.68 0.342365
Target:  5'- uGGCGCGCagCGCCGcgucacgggccaGCUCGUcguaucgGACGGUa -3'
miRNA:   3'- -CCGUGCGa-GUGGC------------CGGGCAa------CUGCCA- -5'
17077 3' -59.7 NC_004333.2 + 17768 0.68 0.342365
Target:  5'- cGGCGCGCgaauUCGGUCCGgcGcCGGUc -3'
miRNA:   3'- -CCGUGCGagu-GGCCGGGCaaCuGCCA- -5'
17077 3' -59.7 NC_004333.2 + 5610 0.68 0.342365
Target:  5'- uGGCaacgACGCggauaagGCCGugauGCCCGUUGACGGc -3'
miRNA:   3'- -CCG----UGCGag-----UGGC----CGGGCAACUGCCa -5'
17077 3' -59.7 NC_004333.2 + 47429 0.68 0.342365
Target:  5'- cGC-CGCUCGCCGGCgccaauCCGUUcGACGc- -3'
miRNA:   3'- cCGuGCGAGUGGCCG------GGCAA-CUGCca -5'
17077 3' -59.7 NC_004333.2 + 9028 0.69 0.326568
Target:  5'- cGGCGCGCUCGCUG-CCU-UUGGCGa- -3'
miRNA:   3'- -CCGUGCGAGUGGCcGGGcAACUGCca -5'
17077 3' -59.7 NC_004333.2 + 44382 0.69 0.326568
Target:  5'- uGCGCuGCUCGgCGGCgCGUgcGCGGUa -3'
miRNA:   3'- cCGUG-CGAGUgGCCGgGCAacUGCCA- -5'
17077 3' -59.7 NC_004333.2 + 25719 0.69 0.303899
Target:  5'- uGGCuuGCUCGCCGGCCagcugcagGcCGGUc -3'
miRNA:   3'- -CCGugCGAGUGGCCGGgcaa----CuGCCA- -5'
17077 3' -59.7 NC_004333.2 + 28557 0.7 0.282459
Target:  5'- cGGcCGCGCUCGCCGcGCUCGccgUGACc-- -3'
miRNA:   3'- -CC-GUGCGAGUGGC-CGGGCa--ACUGcca -5'
17077 3' -59.7 NC_004333.2 + 9850 0.7 0.266846
Target:  5'- cGGCACGCccucgaggcgcauuUCGCCGGUcgCCGcgUGcACGGUc -3'
miRNA:   3'- -CCGUGCG--------------AGUGGCCG--GGCa-AC-UGCCA- -5'
17077 3' -59.7 NC_004333.2 + 8649 0.7 0.262235
Target:  5'- cGGCGCGg-CGcCCGGCuuGcucgUGACGGUg -3'
miRNA:   3'- -CCGUGCgaGU-GGCCGggCa---ACUGCCA- -5'
17077 3' -59.7 NC_004333.2 + 47554 0.7 0.25576
Target:  5'- -aCugGCagCACCGGCCCGcUGuCGGg -3'
miRNA:   3'- ccGugCGa-GUGGCCGGGCaACuGCCa -5'
17077 3' -59.7 NC_004333.2 + 13057 0.71 0.243204
Target:  5'- cGGCAUGCUCAUUGGCugCCGguaaUGGCGa- -3'
miRNA:   3'- -CCGUGCGAGUGGCCG--GGCa---ACUGCca -5'
17077 3' -59.7 NC_004333.2 + 10303 0.71 0.237121
Target:  5'- aGGCcgaaGCGCUCACCGGCCuCGggcucGAgucCGGa -3'
miRNA:   3'- -CCG----UGCGAGUGGCCGG-GCaa---CU---GCCa -5'
17077 3' -59.7 NC_004333.2 + 32310 0.72 0.208595
Target:  5'- cGGCuCGCUCGCgGGCUCGcacaaggaagaUGACGGg -3'
miRNA:   3'- -CCGuGCGAGUGgCCGGGCa----------ACUGCCa -5'
17077 3' -59.7 NC_004333.2 + 39492 0.72 0.192938
Target:  5'- cGGCACGUUCGCCGuGCUgaaCGccGACGGc -3'
miRNA:   3'- -CCGUGCGAGUGGC-CGG---GCaaCUGCCa -5'
17077 3' -59.7 NC_004333.2 + 45006 0.72 0.183081
Target:  5'- cGGCGCGCUguCCGGCCgcucgaccgcgCGUggcgcUGGCGGc -3'
miRNA:   3'- -CCGUGCGAguGGCCGG-----------GCA-----ACUGCCa -5'
17077 3' -59.7 NC_004333.2 + 37669 0.73 0.160365
Target:  5'- cGCGCGCccgacccgcucgUCgGCCGGCCCGgcgcgUGGCGGc -3'
miRNA:   3'- cCGUGCG------------AG-UGGCCGGGCa----ACUGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.