Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17077 | 3' | -59.7 | NC_004333.2 | + | 1869 | 0.67 | 0.384223 |
Target: 5'- cGGUucugACGCgC-CUGGCCCGgauUGGCGGg -3' miRNA: 3'- -CCG----UGCGaGuGGCCGGGCa--ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 2071 | 0.66 | 0.438726 |
Target: 5'- aGCGCGCaccgCGCuCGGCCaagGUUG-CGGUc -3' miRNA: 3'- cCGUGCGa---GUG-GCCGGg--CAACuGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 3216 | 0.67 | 0.410914 |
Target: 5'- cGGCGCGC-CGCCcGcCCCGaUGACGc- -3' miRNA: 3'- -CCGUGCGaGUGGcC-GGGCaACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 5610 | 0.68 | 0.342365 |
Target: 5'- uGGCaacgACGCggauaagGCCGugauGCCCGUUGACGGc -3' miRNA: 3'- -CCG----UGCGag-----UGGC----CGGGCAACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 8649 | 0.7 | 0.262235 |
Target: 5'- cGGCGCGg-CGcCCGGCuuGcucgUGACGGUg -3' miRNA: 3'- -CCGUGCgaGU-GGCCGggCa---ACUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 9028 | 0.69 | 0.326568 |
Target: 5'- cGGCGCGCUCGCUG-CCU-UUGGCGa- -3' miRNA: 3'- -CCGUGCGAGUGGCcGGGcAACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 9605 | 0.68 | 0.373019 |
Target: 5'- cGGCGCGg-CAUCGGCCgGUUGcgcaccggcugccgGCGGc -3' miRNA: 3'- -CCGUGCgaGUGGCCGGgCAAC--------------UGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 9850 | 0.7 | 0.266846 |
Target: 5'- cGGCACGCccucgaggcgcauuUCGCCGGUcgCCGcgUGcACGGUc -3' miRNA: 3'- -CCGUGCG--------------AGUGGCCG--GGCa-AC-UGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 10303 | 0.71 | 0.237121 |
Target: 5'- aGGCcgaaGCGCUCACCGGCCuCGggcucGAgucCGGa -3' miRNA: 3'- -CCG----UGCGAGUGGCCGG-GCaa---CU---GCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 11833 | 0.68 | 0.358706 |
Target: 5'- cGGCGCGCUCcagcuugcGCCGGUacaucgcuuCCGUcUGcCGGUc -3' miRNA: 3'- -CCGUGCGAG--------UGGCCG---------GGCA-ACuGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 12092 | 0.68 | 0.342365 |
Target: 5'- uGGCGCGCagCGCCGcgucacgggccaGCUCGUcguaucgGACGGUa -3' miRNA: 3'- -CCGUGCGa-GUGGC------------CGGGCAa------CUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 12696 | 1.1 | 0.000313 |
Target: 5'- cGGCACGCUCACCGGCCCGUUGACGGUg -3' miRNA: 3'- -CCGUGCGAGUGGCCGGGCAACUGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 13057 | 0.71 | 0.243204 |
Target: 5'- cGGCAUGCUCAUUGGCugCCGguaaUGGCGa- -3' miRNA: 3'- -CCGUGCGAGUGGCCG--GGCa---ACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 17768 | 0.68 | 0.342365 |
Target: 5'- cGGCGCGCgaauUCGGUCCGgcGcCGGUc -3' miRNA: 3'- -CCGUGCGagu-GGCCGGGCaaCuGCCA- -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 20326 | 0.66 | 0.477419 |
Target: 5'- -cCAgGCUUGCCGGCC-GUgccGACGGg -3' miRNA: 3'- ccGUgCGAGUGGCCGGgCAa--CUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 20880 | 0.67 | 0.420063 |
Target: 5'- uGGC-CGCaucaucgguuUCGCCGGCUCG-UGGCGa- -3' miRNA: 3'- -CCGuGCG----------AGUGGCCGGGCaACUGCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 22783 | 0.74 | 0.152012 |
Target: 5'- aGGCGCGCUCGCCggauGGCUCGaUGugGu- -3' miRNA: 3'- -CCGUGCGAGUGG----CCGGGCaACugCca -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 23063 | 0.78 | 0.078646 |
Target: 5'- cGCGCcgccguGCUCGCCGuGCCCGgagUGACGGa -3' miRNA: 3'- cCGUG------CGAGUGGC-CGGGCa--ACUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 23659 | 0.68 | 0.367078 |
Target: 5'- aGGCggaACGC-CGCCGGCCUcc-GGCGGc -3' miRNA: 3'- -CCG---UGCGaGUGGCCGGGcaaCUGCCa -5' |
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17077 | 3' | -59.7 | NC_004333.2 | + | 25719 | 0.69 | 0.303899 |
Target: 5'- uGGCuuGCUCGCCGGCCagcugcagGcCGGUc -3' miRNA: 3'- -CCGugCGAGUGGCCGGgcaa----CuGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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