miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17078 3' -57.3 NC_004333.2 + 31106 0.66 0.549046
Target:  5'- --gCCCGUCAGcGGCGcgaguugcugcucGCgCGCGAGCCc -3'
miRNA:   3'- uagGGGUAGUU-CCGC-------------UG-GCGCUUGGu -5'
17078 3' -57.3 NC_004333.2 + 24845 0.66 0.539357
Target:  5'- cUCgaCCGUC--GGCGGCCGCacGAACCGc -3'
miRNA:   3'- uAGg-GGUAGuuCCGCUGGCG--CUUGGU- -5'
17078 3' -57.3 NC_004333.2 + 30538 0.66 0.527596
Target:  5'- cAUCCCCAcUCGAGcgccuucGCGAUCGUcuGCCAg -3'
miRNA:   3'- -UAGGGGU-AGUUC-------CGCUGGCGcuUGGU- -5'
17078 3' -57.3 NC_004333.2 + 14403 0.67 0.507514
Target:  5'- gGUCgCCAUgAAGGCGAguuucUCGCGccGCCAg -3'
miRNA:   3'- -UAGgGGUAgUUCCGCU-----GGCGCu-UGGU- -5'
17078 3' -57.3 NC_004333.2 + 26770 0.67 0.507514
Target:  5'- uUgCCCAUUccGGCG-CCGCGcuCCAa -3'
miRNA:   3'- uAgGGGUAGuuCCGCuGGCGCuuGGU- -5'
17078 3' -57.3 NC_004333.2 + 33781 0.67 0.497076
Target:  5'- cUCgCCuUCAuGGCGACCGCGcAGgCAa -3'
miRNA:   3'- uAGgGGuAGUuCCGCUGGCGC-UUgGU- -5'
17078 3' -57.3 NC_004333.2 + 41975 0.67 0.466366
Target:  5'- uGUCgCCAgugcGGGCGACCGC--GCCAa -3'
miRNA:   3'- -UAGgGGUagu-UCCGCUGGCGcuUGGU- -5'
17078 3' -57.3 NC_004333.2 + 8463 0.67 0.46536
Target:  5'- -gUCCCA-CAGGauuuucguaccucGCGACgGCGAGCCAg -3'
miRNA:   3'- uaGGGGUaGUUC-------------CGCUGgCGCUUGGU- -5'
17078 3' -57.3 NC_004333.2 + 38341 0.68 0.445465
Target:  5'- cGUgCCCGUCAugcgcucAGGCGA-CGCGGACgGg -3'
miRNA:   3'- -UAgGGGUAGU-------UCCGCUgGCGCUUGgU- -5'
17078 3' -57.3 NC_004333.2 + 3610 0.68 0.408089
Target:  5'- uUCgCCCAgucGGGCGcCUGCGGGCCGu -3'
miRNA:   3'- uAG-GGGUaguUCCGCuGGCGCUUGGU- -5'
17078 3' -57.3 NC_004333.2 + 24035 0.75 0.149878
Target:  5'- cUgCUCGUgAAGGCGGCCGCGAACa- -3'
miRNA:   3'- uAgGGGUAgUUCCGCUGGCGCUUGgu -5'
17078 3' -57.3 NC_004333.2 + 12178 1.07 0.000704
Target:  5'- gAUCCCCAUCAAGGCGACCGCGAACCAg -3'
miRNA:   3'- -UAGGGGUAGUUCCGCUGGCGCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.