Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17078 | 3' | -57.3 | NC_004333.2 | + | 31106 | 0.66 | 0.549046 |
Target: 5'- --gCCCGUCAGcGGCGcgaguugcugcucGCgCGCGAGCCc -3' miRNA: 3'- uagGGGUAGUU-CCGC-------------UG-GCGCUUGGu -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 24845 | 0.66 | 0.539357 |
Target: 5'- cUCgaCCGUC--GGCGGCCGCacGAACCGc -3' miRNA: 3'- uAGg-GGUAGuuCCGCUGGCG--CUUGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 30538 | 0.66 | 0.527596 |
Target: 5'- cAUCCCCAcUCGAGcgccuucGCGAUCGUcuGCCAg -3' miRNA: 3'- -UAGGGGU-AGUUC-------CGCUGGCGcuUGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 14403 | 0.67 | 0.507514 |
Target: 5'- gGUCgCCAUgAAGGCGAguuucUCGCGccGCCAg -3' miRNA: 3'- -UAGgGGUAgUUCCGCU-----GGCGCu-UGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 41975 | 0.67 | 0.466366 |
Target: 5'- uGUCgCCAgugcGGGCGACCGC--GCCAa -3' miRNA: 3'- -UAGgGGUagu-UCCGCUGGCGcuUGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 8463 | 0.67 | 0.46536 |
Target: 5'- -gUCCCA-CAGGauuuucguaccucGCGACgGCGAGCCAg -3' miRNA: 3'- uaGGGGUaGUUC-------------CGCUGgCGCUUGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 33781 | 0.67 | 0.497076 |
Target: 5'- cUCgCCuUCAuGGCGACCGCGcAGgCAa -3' miRNA: 3'- uAGgGGuAGUuCCGCUGGCGC-UUgGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 26770 | 0.67 | 0.507514 |
Target: 5'- uUgCCCAUUccGGCG-CCGCGcuCCAa -3' miRNA: 3'- uAgGGGUAGuuCCGCuGGCGCuuGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 3610 | 0.68 | 0.408089 |
Target: 5'- uUCgCCCAgucGGGCGcCUGCGGGCCGu -3' miRNA: 3'- uAG-GGGUaguUCCGCuGGCGCUUGGU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 38341 | 0.68 | 0.445465 |
Target: 5'- cGUgCCCGUCAugcgcucAGGCGA-CGCGGACgGg -3' miRNA: 3'- -UAgGGGUAGU-------UCCGCUgGCGCUUGgU- -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 24035 | 0.75 | 0.149878 |
Target: 5'- cUgCUCGUgAAGGCGGCCGCGAACa- -3' miRNA: 3'- uAgGGGUAgUUCCGCUGGCGCUUGgu -5' |
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17078 | 3' | -57.3 | NC_004333.2 | + | 12178 | 1.07 | 0.000704 |
Target: 5'- gAUCCCCAUCAAGGCGACCGCGAACCAg -3' miRNA: 3'- -UAGGGGUAGUUCCGCUGGCGCUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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