miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17078 5' -54.1 NC_004333.2 + 47982 0.65 0.765033
Target:  5'- gGCGGUGUgcggcugugcuacaUCGGCgcguucuGGCUUGcccGCGCg -3'
miRNA:   3'- gUGCCACG--------------AGCUG-------CCGAACuuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 28177 0.66 0.762959
Target:  5'- -cCGGUGCUCGAcaaacguauaaauguCaGGCUccUGGuugucuUGCGCg -3'
miRNA:   3'- guGCCACGAGCU---------------G-CCGA--ACUu-----ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 41850 0.66 0.758795
Target:  5'- gCGCGGUGCggUCGuccucACGGC-----UGCGCa -3'
miRNA:   3'- -GUGCCACG--AGC-----UGCCGaacuuACGCG- -5'
17078 5' -54.1 NC_004333.2 + 4266 0.66 0.758795
Target:  5'- -uCGGUGCgcuaCGugGcGUUUGGucGCGCa -3'
miRNA:   3'- guGCCACGa---GCugC-CGAACUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 40019 0.66 0.758795
Target:  5'- uCACGGaaCUCGcGCGGCgccAcgGCGCg -3'
miRNA:   3'- -GUGCCacGAGC-UGCCGaacUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 13900 0.66 0.748293
Target:  5'- gCACGGgcUGCgCGGCGGCUgccGUG-GCg -3'
miRNA:   3'- -GUGCC--ACGaGCUGCCGAacuUACgCG- -5'
17078 5' -54.1 NC_004333.2 + 9529 0.66 0.748293
Target:  5'- gCGCGuuuUGCUCGACGaGCUgcuucAAUGCGg -3'
miRNA:   3'- -GUGCc--ACGAGCUGC-CGAac---UUACGCg -5'
17078 5' -54.1 NC_004333.2 + 17503 0.66 0.748293
Target:  5'- gGCGGcgGCgCGaACGGCUucaUGAagGUGCu -3'
miRNA:   3'- gUGCCa-CGaGC-UGCCGA---ACUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 13940 0.66 0.748293
Target:  5'- gGCGucaaGUGCgacCGGCGGCgacAAUGUGCg -3'
miRNA:   3'- gUGC----CACGa--GCUGCCGaacUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 47909 0.66 0.745118
Target:  5'- gACcGUGCUCGGCGGCgUGAcgaccacaucgaacGgcacgGCGUg -3'
miRNA:   3'- gUGcCACGAGCUGCCGaACU--------------Ua----CGCG- -5'
17078 5' -54.1 NC_004333.2 + 12045 0.66 0.744058
Target:  5'- uGCGGUGUgcucgucguucaguUCGAcgucaaaCGGCUcuaAGUGCGCa -3'
miRNA:   3'- gUGCCACG--------------AGCU-------GCCGAac-UUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 38232 0.66 0.737669
Target:  5'- uGCGGU--UCGACGGCaaacaccUGCGCg -3'
miRNA:   3'- gUGCCAcgAGCUGCCGaacuu--ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 9472 0.66 0.726936
Target:  5'- gGCGaGcGC-CGGCGGCUgcggGAAUuucaGCGCg -3'
miRNA:   3'- gUGC-CaCGaGCUGCCGAa---CUUA----CGCG- -5'
17078 5' -54.1 NC_004333.2 + 22190 0.66 0.726936
Target:  5'- gGCGGcgGUUCGGCGGCUgcgGccUGCu- -3'
miRNA:   3'- gUGCCa-CGAGCUGCCGAa--CuuACGcg -5'
17078 5' -54.1 NC_004333.2 + 9093 0.66 0.726936
Target:  5'- uCACGaGUGCcgaCGcACGGCgcacGAGUcGCGCg -3'
miRNA:   3'- -GUGC-CACGa--GC-UGCCGaa--CUUA-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 41616 0.66 0.725857
Target:  5'- aCGCGcucgcucGUGCUCuGGCGGCagaUUGucggGCGCg -3'
miRNA:   3'- -GUGC-------CACGAG-CUGCCG---AACuua-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 13354 0.66 0.716104
Target:  5'- gCACGGUGUaCGggcGCGGCacGAGcgGCGUg -3'
miRNA:   3'- -GUGCCACGaGC---UGCCGaaCUUa-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 10585 0.66 0.716104
Target:  5'- gGCGGUGCUaCGAgcUGGCcUGAAUucacGuCGCu -3'
miRNA:   3'- gUGCCACGA-GCU--GCCGaACUUA----C-GCG- -5'
17078 5' -54.1 NC_004333.2 + 27667 0.66 0.716104
Target:  5'- aGCGGcGCggCGGCGGCcggcagcGGuUGCGCg -3'
miRNA:   3'- gUGCCaCGa-GCUGCCGaa-----CUuACGCG- -5'
17078 5' -54.1 NC_004333.2 + 36438 0.66 0.716104
Target:  5'- -uCGGUGC-CGGuCGGCUgccgGAcaucGCGCa -3'
miRNA:   3'- guGCCACGaGCU-GCCGAa---CUua--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.