Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17078 | 5' | -54.1 | NC_004333.2 | + | 47982 | 0.65 | 0.765033 |
Target: 5'- gGCGGUGUgcggcugugcuacaUCGGCgcguucuGGCUUGcccGCGCg -3' miRNA: 3'- gUGCCACG--------------AGCUG-------CCGAACuuaCGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 41850 | 0.66 | 0.758795 |
Target: 5'- gCGCGGUGCggUCGuccucACGGC-----UGCGCa -3' miRNA: 3'- -GUGCCACG--AGC-----UGCCGaacuuACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 40019 | 0.66 | 0.758795 |
Target: 5'- uCACGGaaCUCGcGCGGCgccAcgGCGCg -3' miRNA: 3'- -GUGCCacGAGC-UGCCGaacUuaCGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 28177 | 0.66 | 0.762959 |
Target: 5'- -cCGGUGCUCGAcaaacguauaaauguCaGGCUccUGGuugucuUGCGCg -3' miRNA: 3'- guGCCACGAGCU---------------G-CCGA--ACUu-----ACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 12045 | 0.66 | 0.744058 |
Target: 5'- uGCGGUGUgcucgucguucaguUCGAcgucaaaCGGCUcuaAGUGCGCa -3' miRNA: 3'- gUGCCACG--------------AGCU-------GCCGAac-UUACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 22190 | 0.66 | 0.726936 |
Target: 5'- gGCGGcgGUUCGGCGGCUgcgGccUGCu- -3' miRNA: 3'- gUGCCa-CGAGCUGCCGAa--CuuACGcg -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 13900 | 0.66 | 0.748293 |
Target: 5'- gCACGGgcUGCgCGGCGGCUgccGUG-GCg -3' miRNA: 3'- -GUGCC--ACGaGCUGCCGAacuUACgCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 9529 | 0.66 | 0.748293 |
Target: 5'- gCGCGuuuUGCUCGACGaGCUgcuucAAUGCGg -3' miRNA: 3'- -GUGCc--ACGAGCUGC-CGAac---UUACGCg -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 41616 | 0.66 | 0.725857 |
Target: 5'- aCGCGcucgcucGUGCUCuGGCGGCagaUUGucggGCGCg -3' miRNA: 3'- -GUGC-------CACGAG-CUGCCG---AACuua-CGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 10585 | 0.66 | 0.716104 |
Target: 5'- gGCGGUGCUaCGAgcUGGCcUGAAUucacGuCGCu -3' miRNA: 3'- gUGCCACGA-GCU--GCCGaACUUA----C-GCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 29400 | 0.66 | 0.712838 |
Target: 5'- gCGCGGUucagCGAUGGCggGAaggggagccgcaacGUGCGCg -3' miRNA: 3'- -GUGCCAcga-GCUGCCGaaCU--------------UACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 27667 | 0.66 | 0.716104 |
Target: 5'- aGCGGcGCggCGGCGGCcggcagcGGuUGCGCg -3' miRNA: 3'- gUGCCaCGa-GCUGCCGaa-----CUuACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 4266 | 0.66 | 0.758795 |
Target: 5'- -uCGGUGCgcuaCGugGcGUUUGGucGCGCa -3' miRNA: 3'- guGCCACGa---GCugC-CGAACUuaCGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 17503 | 0.66 | 0.748293 |
Target: 5'- gGCGGcgGCgCGaACGGCUucaUGAagGUGCu -3' miRNA: 3'- gUGCCa-CGaGC-UGCCGA---ACUuaCGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 13940 | 0.66 | 0.748293 |
Target: 5'- gGCGucaaGUGCgacCGGCGGCgacAAUGUGCg -3' miRNA: 3'- gUGC----CACGa--GCUGCCGaacUUACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 47909 | 0.66 | 0.745118 |
Target: 5'- gACcGUGCUCGGCGGCgUGAcgaccacaucgaacGgcacgGCGUg -3' miRNA: 3'- gUGcCACGAGCUGCCGaACU--------------Ua----CGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 38232 | 0.66 | 0.737669 |
Target: 5'- uGCGGU--UCGACGGCaaacaccUGCGCg -3' miRNA: 3'- gUGCCAcgAGCUGCCGaacuu--ACGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 9093 | 0.66 | 0.726936 |
Target: 5'- uCACGaGUGCcgaCGcACGGCgcacGAGUcGCGCg -3' miRNA: 3'- -GUGC-CACGa--GC-UGCCGaa--CUUA-CGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 9472 | 0.66 | 0.726936 |
Target: 5'- gGCGaGcGC-CGGCGGCUgcggGAAUuucaGCGCg -3' miRNA: 3'- gUGC-CaCGaGCUGCCGAa---CUUA----CGCG- -5' |
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17078 | 5' | -54.1 | NC_004333.2 | + | 36438 | 0.66 | 0.716104 |
Target: 5'- -uCGGUGC-CGGuCGGCUgccgGAcaucGCGCa -3' miRNA: 3'- guGCCACGaGCU-GCCGAa---CUua--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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