miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17078 5' -54.1 NC_004333.2 + 12213 1.12 0.000665
Target:  5'- gCACGGUGCUCGACGGCUUGAAUGCGCa -3'
miRNA:   3'- -GUGCCACGAGCUGCCGAACUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 37326 0.84 0.065597
Target:  5'- gGCGGUGCUCGACGcGCUcGAAucUGCGUc -3'
miRNA:   3'- gUGCCACGAGCUGC-CGAaCUU--ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 44382 0.78 0.173785
Target:  5'- uGCGcUGCUCGGCGGCgc--GUGCGCg -3'
miRNA:   3'- gUGCcACGAGCUGCCGaacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 39056 0.75 0.253443
Target:  5'- uGCGuuacGUGCUCGGCGGCgacauUGCGCu -3'
miRNA:   3'- gUGC----CACGAGCUGCCGaacuuACGCG- -5'
17078 5' -54.1 NC_004333.2 + 18187 0.75 0.260154
Target:  5'- gCAUGGUGCUCGcgcuCGGCgccggUGGcaGCGCg -3'
miRNA:   3'- -GUGCCACGAGCu---GCCGa----ACUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 9004 0.73 0.327146
Target:  5'- aCGCGGcGUUCG-CGGCUUGccagGcgGCGCg -3'
miRNA:   3'- -GUGCCaCGAGCuGCCGAAC----UuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 12808 0.73 0.343667
Target:  5'- -uCGGUGCcgUCaGGCGGCUUGGggGCGg -3'
miRNA:   3'- guGCCACG--AG-CUGCCGAACUuaCGCg -5'
17078 5' -54.1 NC_004333.2 + 41300 0.73 0.36078
Target:  5'- cCGCGauccGCUCGAUGGCUgcgcaaUGcAGUGCGCa -3'
miRNA:   3'- -GUGCca--CGAGCUGCCGA------AC-UUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 17615 0.71 0.425198
Target:  5'- uCGCGGUGUUCGGCuGGCagacgaucgcGAagGCGCu -3'
miRNA:   3'- -GUGCCACGAGCUG-CCGaa--------CUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 20431 0.71 0.444825
Target:  5'- gACGG-GCUCGGCGGCcgaccaGAuucGCGCc -3'
miRNA:   3'- gUGCCaCGAGCUGCCGaa----CUua-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 23746 0.71 0.46495
Target:  5'- aACGGgcaGCUCGACGcGCgacGAGucguucUGCGCg -3'
miRNA:   3'- gUGCCa--CGAGCUGC-CGaa-CUU------ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 21688 0.71 0.46495
Target:  5'- gACGGccgagcaGCUCGACGcGCUcu-AUGCGCa -3'
miRNA:   3'- gUGCCa------CGAGCUGC-CGAacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 19146 0.7 0.475188
Target:  5'- gCGCGGUGCUCGcGCuGGUUaucgUGcuagccgcgcgcGAUGCGCa -3'
miRNA:   3'- -GUGCCACGAGC-UG-CCGA----AC------------UUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 7565 0.7 0.495994
Target:  5'- aCAUGGcGgUCGGCGGCa-GAcccAUGCGCa -3'
miRNA:   3'- -GUGCCaCgAGCUGCCGaaCU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 45422 0.7 0.495994
Target:  5'- -uCGGU-UUCGGCGGCggcGAcgGCGCa -3'
miRNA:   3'- guGCCAcGAGCUGCCGaa-CUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 41577 0.7 0.50655
Target:  5'- uGCGGcGCUgGGCGGCgcgccgUGGcgGCGa -3'
miRNA:   3'- gUGCCaCGAgCUGCCGa-----ACUuaCGCg -5'
17078 5' -54.1 NC_004333.2 + 30999 0.69 0.538762
Target:  5'- uGCGGgcUGCUCGcGCGGUa--GGUGCGCu -3'
miRNA:   3'- gUGCC--ACGAGC-UGCCGaacUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 25747 0.69 0.571644
Target:  5'- uCGCGuucCUCGGCGGUcUGAucgGUGCGCg -3'
miRNA:   3'- -GUGCcacGAGCUGCCGaACU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 43872 0.69 0.582718
Target:  5'- -cCGGUGCUCG-CGGCacugcaaauccUUGucgcacUGCGCg -3'
miRNA:   3'- guGCCACGAGCuGCCG-----------AACuu----ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 47471 0.69 0.582718
Target:  5'- cCACGGcGCUCGcggGCGGCggcacGAucGCGCu -3'
miRNA:   3'- -GUGCCaCGAGC---UGCCGaa---CUuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.