miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17078 5' -54.1 NC_004333.2 + 29400 0.66 0.712838
Target:  5'- gCGCGGUucagCGAUGGCggGAaggggagccgcaacGUGCGCg -3'
miRNA:   3'- -GUGCCAcga-GCUGCCGaaCU--------------UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 32850 0.67 0.705187
Target:  5'- gCGCGGccUGCUCGAguCGGUc-GAuguUGCGCc -3'
miRNA:   3'- -GUGCC--ACGAGCU--GCCGaaCUu--ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 1263 0.67 0.705187
Target:  5'- uCGCGGcGCUCG-CGGCgcugcagcaUGAAcagcagGCGCu -3'
miRNA:   3'- -GUGCCaCGAGCuGCCGa--------ACUUa-----CGCG- -5'
17078 5' -54.1 NC_004333.2 + 6656 0.67 0.705187
Target:  5'- aGCGc-GCUCGGCGcGCUcGAGcagGCGCg -3'
miRNA:   3'- gUGCcaCGAGCUGC-CGAaCUUa--CGCG- -5'
17078 5' -54.1 NC_004333.2 + 8966 0.67 0.683143
Target:  5'- gCGCGG-GCuggaUCGugGGCc---GUGCGCg -3'
miRNA:   3'- -GUGCCaCG----AGCugCCGaacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 32923 0.67 0.683143
Target:  5'- gACGGUGCcgCGACaaauggcagcaGGUagGcGUGCGCg -3'
miRNA:   3'- gUGCCACGa-GCUG-----------CCGaaCuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 42550 0.67 0.676486
Target:  5'- gCAUGGUGCgcgUUGccugcaagcugccgcACGGCcUGAacGUGCGCa -3'
miRNA:   3'- -GUGCCACG---AGC---------------UGCCGaACU--UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 5010 0.67 0.672039
Target:  5'- aCACGGUGCcuucCGuCGcGCUUGAcagGCGg -3'
miRNA:   3'- -GUGCCACGa---GCuGC-CGAACUua-CGCg -5'
17078 5' -54.1 NC_004333.2 + 41808 0.67 0.672039
Target:  5'- -cCGGUcaaGCUgccCGACGGCacGAcgGCGCc -3'
miRNA:   3'- guGCCA---CGA---GCUGCCGaaCUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 7495 0.67 0.660897
Target:  5'- -uUGGUGUUCuuuGCGGUcgcGAGUGCGCc -3'
miRNA:   3'- guGCCACGAGc--UGCCGaa-CUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 34063 0.67 0.659781
Target:  5'- uCACGG-GCcacgacgauagcgUCGACGGCaUGAcgAUcGCGCu -3'
miRNA:   3'- -GUGCCaCG-------------AGCUGCCGaACU--UA-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 21883 0.68 0.649726
Target:  5'- -cCGGcuuucGCaUCGACGGCgc-GGUGCGCg -3'
miRNA:   3'- guGCCa----CG-AGCUGCCGaacUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 18805 0.68 0.616159
Target:  5'- uCGCGGg---CGACGagccGCUUGAAgUGCGCg -3'
miRNA:   3'- -GUGCCacgaGCUGC----CGAACUU-ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 7029 0.68 0.604985
Target:  5'- aACGGcgaaUCGGuCGGUUUGAacuGUGCGCg -3'
miRNA:   3'- gUGCCacg-AGCU-GCCGAACU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 38733 0.68 0.604985
Target:  5'- -cUGGUGCgcagGACGGCgaaccgGAcggcGUGCGCa -3'
miRNA:   3'- guGCCACGag--CUGCCGaa----CU----UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 15495 0.68 0.593835
Target:  5'- aCAgGGcUGCUCG-CGGCggucaccGGcgGCGCg -3'
miRNA:   3'- -GUgCC-ACGAGCuGCCGaa-----CUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 1624 0.68 0.593835
Target:  5'- -cCGGgucgaaUGCgucgUCGGCGGCguagcccUGAAUGCGCu -3'
miRNA:   3'- guGCC------ACG----AGCUGCCGa------ACUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 43872 0.69 0.582718
Target:  5'- -cCGGUGCUCG-CGGCacugcaaauccUUGucgcacUGCGCg -3'
miRNA:   3'- guGCCACGAGCuGCCG-----------AACuu----ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 47471 0.69 0.582718
Target:  5'- cCACGGcGCUCGcggGCGGCggcacGAucGCGCu -3'
miRNA:   3'- -GUGCCaCGAGC---UGCCGaa---CUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 25747 0.69 0.571644
Target:  5'- uCGCGuucCUCGGCGGUcUGAucgGUGCGCg -3'
miRNA:   3'- -GUGCcacGAGCUGCCGaACU---UACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.