miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17078 5' -54.1 NC_004333.2 + 1263 0.67 0.705187
Target:  5'- uCGCGGcGCUCG-CGGCgcugcagcaUGAAcagcagGCGCu -3'
miRNA:   3'- -GUGCCaCGAGCuGCCGa--------ACUUa-----CGCG- -5'
17078 5' -54.1 NC_004333.2 + 1624 0.68 0.593835
Target:  5'- -cCGGgucgaaUGCgucgUCGGCGGCguagcccUGAAUGCGCu -3'
miRNA:   3'- guGCC------ACG----AGCUGCCGa------ACUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 4266 0.66 0.758795
Target:  5'- -uCGGUGCgcuaCGugGcGUUUGGucGCGCa -3'
miRNA:   3'- guGCCACGa---GCugC-CGAACUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 5010 0.67 0.672039
Target:  5'- aCACGGUGCcuucCGuCGcGCUUGAcagGCGg -3'
miRNA:   3'- -GUGCCACGa---GCuGC-CGAACUua-CGCg -5'
17078 5' -54.1 NC_004333.2 + 6656 0.67 0.705187
Target:  5'- aGCGc-GCUCGGCGcGCUcGAGcagGCGCg -3'
miRNA:   3'- gUGCcaCGAGCUGC-CGAaCUUa--CGCG- -5'
17078 5' -54.1 NC_004333.2 + 7029 0.68 0.604985
Target:  5'- aACGGcgaaUCGGuCGGUUUGAacuGUGCGCg -3'
miRNA:   3'- gUGCCacg-AGCU-GCCGAACU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 7495 0.67 0.660897
Target:  5'- -uUGGUGUUCuuuGCGGUcgcGAGUGCGCc -3'
miRNA:   3'- guGCCACGAGc--UGCCGaa-CUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 7565 0.7 0.495994
Target:  5'- aCAUGGcGgUCGGCGGCa-GAcccAUGCGCa -3'
miRNA:   3'- -GUGCCaCgAGCUGCCGaaCU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 8966 0.67 0.683143
Target:  5'- gCGCGG-GCuggaUCGugGGCc---GUGCGCg -3'
miRNA:   3'- -GUGCCaCG----AGCugCCGaacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 9004 0.73 0.327146
Target:  5'- aCGCGGcGUUCG-CGGCUUGccagGcgGCGCg -3'
miRNA:   3'- -GUGCCaCGAGCuGCCGAAC----UuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 9093 0.66 0.726936
Target:  5'- uCACGaGUGCcgaCGcACGGCgcacGAGUcGCGCg -3'
miRNA:   3'- -GUGC-CACGa--GC-UGCCGaa--CUUA-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 9472 0.66 0.726936
Target:  5'- gGCGaGcGC-CGGCGGCUgcggGAAUuucaGCGCg -3'
miRNA:   3'- gUGC-CaCGaGCUGCCGAa---CUUA----CGCG- -5'
17078 5' -54.1 NC_004333.2 + 9529 0.66 0.748293
Target:  5'- gCGCGuuuUGCUCGACGaGCUgcuucAAUGCGg -3'
miRNA:   3'- -GUGCc--ACGAGCUGC-CGAac---UUACGCg -5'
17078 5' -54.1 NC_004333.2 + 10585 0.66 0.716104
Target:  5'- gGCGGUGCUaCGAgcUGGCcUGAAUucacGuCGCu -3'
miRNA:   3'- gUGCCACGA-GCU--GCCGaACUUA----C-GCG- -5'
17078 5' -54.1 NC_004333.2 + 12045 0.66 0.744058
Target:  5'- uGCGGUGUgcucgucguucaguUCGAcgucaaaCGGCUcuaAGUGCGCa -3'
miRNA:   3'- gUGCCACG--------------AGCU-------GCCGAac-UUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 12213 1.12 0.000665
Target:  5'- gCACGGUGCUCGACGGCUUGAAUGCGCa -3'
miRNA:   3'- -GUGCCACGAGCUGCCGAACUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 12808 0.73 0.343667
Target:  5'- -uCGGUGCcgUCaGGCGGCUUGGggGCGg -3'
miRNA:   3'- guGCCACG--AG-CUGCCGAACUuaCGCg -5'
17078 5' -54.1 NC_004333.2 + 13354 0.66 0.716104
Target:  5'- gCACGGUGUaCGggcGCGGCacGAGcgGCGUg -3'
miRNA:   3'- -GUGCCACGaGC---UGCCGaaCUUa-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 13900 0.66 0.748293
Target:  5'- gCACGGgcUGCgCGGCGGCUgccGUG-GCg -3'
miRNA:   3'- -GUGCC--ACGaGCUGCCGAacuUACgCG- -5'
17078 5' -54.1 NC_004333.2 + 13940 0.66 0.748293
Target:  5'- gGCGucaaGUGCgacCGGCGGCgacAAUGUGCg -3'
miRNA:   3'- gUGC----CACGa--GCUGCCGaacUUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.