miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17078 5' -54.1 NC_004333.2 + 37326 0.84 0.065597
Target:  5'- gGCGGUGCUCGACGcGCUcGAAucUGCGUc -3'
miRNA:   3'- gUGCCACGAGCUGC-CGAaCUU--ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 32850 0.67 0.705187
Target:  5'- gCGCGGccUGCUCGAguCGGUc-GAuguUGCGCc -3'
miRNA:   3'- -GUGCC--ACGAGCU--GCCGaaCUu--ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 10585 0.66 0.716104
Target:  5'- gGCGGUGCUaCGAgcUGGCcUGAAUucacGuCGCu -3'
miRNA:   3'- gUGCCACGA-GCU--GCCGaACUUA----C-GCG- -5'
17078 5' -54.1 NC_004333.2 + 47982 0.65 0.765033
Target:  5'- gGCGGUGUgcggcugugcuacaUCGGCgcguucuGGCUUGcccGCGCg -3'
miRNA:   3'- gUGCCACG--------------AGCUG-------CCGAACuuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 23746 0.71 0.46495
Target:  5'- aACGGgcaGCUCGACGcGCgacGAGucguucUGCGCg -3'
miRNA:   3'- gUGCCa--CGAGCUGC-CGaa-CUU------ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 7565 0.7 0.495994
Target:  5'- aCAUGGcGgUCGGCGGCa-GAcccAUGCGCa -3'
miRNA:   3'- -GUGCCaCgAGCUGCCGaaCU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 30999 0.69 0.538762
Target:  5'- uGCGGgcUGCUCGcGCGGUa--GGUGCGCu -3'
miRNA:   3'- gUGCC--ACGAGC-UGCCGaacUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 43872 0.69 0.582718
Target:  5'- -cCGGUGCUCG-CGGCacugcaaauccUUGucgcacUGCGCg -3'
miRNA:   3'- guGCCACGAGCuGCCG-----------AACuu----ACGCG- -5'
17078 5' -54.1 NC_004333.2 + 7029 0.68 0.604985
Target:  5'- aACGGcgaaUCGGuCGGUUUGAacuGUGCGCg -3'
miRNA:   3'- gUGCCacg-AGCU-GCCGAACU---UACGCG- -5'
17078 5' -54.1 NC_004333.2 + 6656 0.67 0.705187
Target:  5'- aGCGc-GCUCGGCGcGCUcGAGcagGCGCg -3'
miRNA:   3'- gUGCcaCGAGCUGC-CGAaCUUa--CGCG- -5'
17078 5' -54.1 NC_004333.2 + 41808 0.67 0.672039
Target:  5'- -cCGGUcaaGCUgccCGACGGCacGAcgGCGCc -3'
miRNA:   3'- guGCCA---CGA---GCUGCCGaaCUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 1624 0.68 0.593835
Target:  5'- -cCGGgucgaaUGCgucgUCGGCGGCguagcccUGAAUGCGCu -3'
miRNA:   3'- guGCC------ACG----AGCUGCCGa------ACUUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 44382 0.78 0.173785
Target:  5'- uGCGcUGCUCGGCGGCgc--GUGCGCg -3'
miRNA:   3'- gUGCcACGAGCUGCCGaacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 8966 0.67 0.683143
Target:  5'- gCGCGG-GCuggaUCGugGGCc---GUGCGCg -3'
miRNA:   3'- -GUGCCaCG----AGCugCCGaacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 9004 0.73 0.327146
Target:  5'- aCGCGGcGUUCG-CGGCUUGccagGcgGCGCg -3'
miRNA:   3'- -GUGCCaCGAGCuGCCGAAC----UuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 15495 0.68 0.593835
Target:  5'- aCAgGGcUGCUCG-CGGCggucaccGGcgGCGCg -3'
miRNA:   3'- -GUgCC-ACGAGCuGCCGaa-----CUuaCGCG- -5'
17078 5' -54.1 NC_004333.2 + 32923 0.67 0.683143
Target:  5'- gACGGUGCcgCGACaaauggcagcaGGUagGcGUGCGCg -3'
miRNA:   3'- gUGCCACGa-GCUG-----------CCGaaCuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 13354 0.66 0.716104
Target:  5'- gCACGGUGUaCGggcGCGGCacGAGcgGCGUg -3'
miRNA:   3'- -GUGCCACGaGC---UGCCGaaCUUa-CGCG- -5'
17078 5' -54.1 NC_004333.2 + 21688 0.71 0.46495
Target:  5'- gACGGccgagcaGCUCGACGcGCUcu-AUGCGCa -3'
miRNA:   3'- gUGCCa------CGAGCUGC-CGAacuUACGCG- -5'
17078 5' -54.1 NC_004333.2 + 45422 0.7 0.495994
Target:  5'- -uCGGU-UUCGGCGGCggcGAcgGCGCa -3'
miRNA:   3'- guGCCAcGAGCUGCCGaa-CUuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.