Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17079 | 3' | -52.7 | NC_004333.2 | + | 44421 | 0.68 | 0.686755 |
Target: 5'- cGGGC--UCGCUggcugguGCGugCGAGgcGCUCGg -3' miRNA: 3'- -UCCGuaAGCGA-------UGCugGUUCa-CGAGC- -5' |
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17079 | 3' | -52.7 | NC_004333.2 | + | 39225 | 0.69 | 0.653996 |
Target: 5'- cGGCcga-GCUGCGugCAA-UGCUCGa -3' miRNA: 3'- uCCGuaagCGAUGCugGUUcACGAGC- -5' |
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17079 | 3' | -52.7 | NC_004333.2 | + | 14668 | 0.69 | 0.619918 |
Target: 5'- cGGCGcauUUCGCgcagcuuguCGGCCGAGUGCa-- -3' miRNA: 3'- uCCGU---AAGCGau-------GCUGGUUCACGagc -5' |
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17079 | 3' | -52.7 | NC_004333.2 | + | 22795 | 0.7 | 0.597238 |
Target: 5'- -cGCA--CGUUGCGuACCAGGUGUUCGu -3' miRNA: 3'- ucCGUaaGCGAUGC-UGGUUCACGAGC- -5' |
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17079 | 3' | -52.7 | NC_004333.2 | + | 21645 | 0.72 | 0.466194 |
Target: 5'- aAGGCAUgcugCGCgcgcagauCGGCCAuuUGCUCGa -3' miRNA: 3'- -UCCGUAa---GCGau------GCUGGUucACGAGC- -5' |
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17079 | 3' | -52.7 | NC_004333.2 | + | 42017 | 0.66 | 0.824442 |
Target: 5'- -cGCGUgaagCGC-GCGGCCAAcgagcggggcGUGCUCGc -3' miRNA: 3'- ucCGUAa---GCGaUGCUGGUU----------CACGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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