miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17079 5' -56.2 NC_004333.2 + 39155 0.66 0.63794
Target:  5'- aCCGAUCUCGacgacauccUGCcgccCGUGCuGcGCGCg -3'
miRNA:   3'- gGGUUAGAGC---------ACGa---GCACGuC-CGCGa -5'
17079 5' -56.2 NC_004333.2 + 3293 0.66 0.63794
Target:  5'- gCCCuuUCUCcuuGUGCgcgCG-GCGGcGCGCg -3'
miRNA:   3'- -GGGuuAGAG---CACGa--GCaCGUC-CGCGa -5'
17079 5' -56.2 NC_004333.2 + 25809 0.66 0.615828
Target:  5'- gCCAucCUCG-GCgCGUGC-GGCGCa -3'
miRNA:   3'- gGGUuaGAGCaCGaGCACGuCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 39255 0.66 0.604789
Target:  5'- cCCCGAg--CG-GC-CG-GCAGGCGCa -3'
miRNA:   3'- -GGGUUagaGCaCGaGCaCGUCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 41612 0.67 0.57185
Target:  5'- gCCCAcgcgcucgCUCGUGCUCuGgcgGCagauugucGGGCGCg -3'
miRNA:   3'- -GGGUua------GAGCACGAG-Ca--CG--------UCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 12931 0.67 0.57185
Target:  5'- -aCAGUUUCGaccaaUGC-CGcacUGCAGGCGCUg -3'
miRNA:   3'- ggGUUAGAGC-----ACGaGC---ACGUCCGCGA- -5'
17079 5' -56.2 NC_004333.2 + 18583 0.67 0.567488
Target:  5'- aCCCG--UUCGUGCaacaaacgaccggCGcgGCAGGCGCg -3'
miRNA:   3'- -GGGUuaGAGCACGa------------GCa-CGUCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 10431 0.67 0.560959
Target:  5'- aCgAcgCUCGUcgauCUCGcGCAGGCGCg -3'
miRNA:   3'- gGgUuaGAGCAc---GAGCaCGUCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 41687 0.68 0.518045
Target:  5'- -----cCUCGUGCUCGacGCGGGCGg- -3'
miRNA:   3'- ggguuaGAGCACGAGCa-CGUCCGCga -5'
17079 5' -56.2 NC_004333.2 + 25967 0.68 0.497076
Target:  5'- gCCC-GUCUCG-GCaUCGaGCAGGcCGCa -3'
miRNA:   3'- -GGGuUAGAGCaCG-AGCaCGUCC-GCGa -5'
17079 5' -56.2 NC_004333.2 + 27374 0.68 0.494999
Target:  5'- aCCCGuuGUCUCGaccuggauaaugGCUUGgagcGCAGGCGUg -3'
miRNA:   3'- -GGGU--UAGAGCa-----------CGAGCa---CGUCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 2692 0.68 0.476496
Target:  5'- -aCGAUCUCGcugaccUGCUCGggcgGCAGGUGg- -3'
miRNA:   3'- ggGUUAGAGC------ACGAGCa---CGUCCGCga -5'
17079 5' -56.2 NC_004333.2 + 44419 0.69 0.436669
Target:  5'- gCCGggCUCGcugGCUggugCGUGCgAGGCGCUc -3'
miRNA:   3'- gGGUuaGAGCa--CGA----GCACG-UCCGCGA- -5'
17079 5' -56.2 NC_004333.2 + 36207 0.7 0.398826
Target:  5'- gCCgCGAUCgUCGacGCUgCGUGCaAGGCGCUc -3'
miRNA:   3'- -GG-GUUAG-AGCa-CGA-GCACG-UCCGCGA- -5'
17079 5' -56.2 NC_004333.2 + 12801 0.71 0.33788
Target:  5'- aCCAAUCUCgGUGC-CGU-CAGGCgGCUu -3'
miRNA:   3'- gGGUUAGAG-CACGaGCAcGUCCG-CGA- -5'
17079 5' -56.2 NC_004333.2 + 6657 0.72 0.306218
Target:  5'- -gCGcgCUCGgcgcGCUCGaGCAGGCGCg -3'
miRNA:   3'- ggGUuaGAGCa---CGAGCaCGUCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 26056 0.72 0.306218
Target:  5'- aCCCGAaacgcuaucgcUCUCGUGCUCGUcuugacggucGCcaaccuGGGCGCc -3'
miRNA:   3'- -GGGUU-----------AGAGCACGAGCA----------CG------UCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 17690 0.72 0.298666
Target:  5'- gCCgCAcgCUCGgGCUCGacaagGUAGGCGCa -3'
miRNA:   3'- -GG-GUuaGAGCaCGAGCa----CGUCCGCGa -5'
17079 5' -56.2 NC_004333.2 + 852 0.73 0.243414
Target:  5'- uUCGAUCUCG-GCuuUCGUGC-GGCGCUu -3'
miRNA:   3'- gGGUUAGAGCaCG--AGCACGuCCGCGA- -5'
17079 5' -56.2 NC_004333.2 + 11999 1.09 0.000704
Target:  5'- gCCCAAUCUCGUGCUCGUGCAGGCGCUc -3'
miRNA:   3'- -GGGUUAGAGCACGAGCACGUCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.