Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17079 | 5' | -56.2 | NC_004333.2 | + | 11999 | 1.09 | 0.000704 |
Target: 5'- gCCCAAUCUCGUGCUCGUGCAGGCGCUc -3' miRNA: 3'- -GGGUUAGAGCACGAGCACGUCCGCGA- -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 852 | 0.73 | 0.243414 |
Target: 5'- uUCGAUCUCG-GCuuUCGUGC-GGCGCUu -3' miRNA: 3'- gGGUUAGAGCaCG--AGCACGuCCGCGA- -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 17690 | 0.72 | 0.298666 |
Target: 5'- gCCgCAcgCUCGgGCUCGacaagGUAGGCGCa -3' miRNA: 3'- -GG-GUuaGAGCaCGAGCa----CGUCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 6657 | 0.72 | 0.306218 |
Target: 5'- -gCGcgCUCGgcgcGCUCGaGCAGGCGCg -3' miRNA: 3'- ggGUuaGAGCa---CGAGCaCGUCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 26056 | 0.72 | 0.306218 |
Target: 5'- aCCCGAaacgcuaucgcUCUCGUGCUCGUcuugacggucGCcaaccuGGGCGCc -3' miRNA: 3'- -GGGUU-----------AGAGCACGAGCA----------CG------UCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 12801 | 0.71 | 0.33788 |
Target: 5'- aCCAAUCUCgGUGC-CGU-CAGGCgGCUu -3' miRNA: 3'- gGGUUAGAG-CACGaGCAcGUCCG-CGA- -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 36207 | 0.7 | 0.398826 |
Target: 5'- gCCgCGAUCgUCGacGCUgCGUGCaAGGCGCUc -3' miRNA: 3'- -GG-GUUAG-AGCa-CGA-GCACG-UCCGCGA- -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 44419 | 0.69 | 0.436669 |
Target: 5'- gCCGggCUCGcugGCUggugCGUGCgAGGCGCUc -3' miRNA: 3'- gGGUuaGAGCa--CGA----GCACG-UCCGCGA- -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 2692 | 0.68 | 0.476496 |
Target: 5'- -aCGAUCUCGcugaccUGCUCGggcgGCAGGUGg- -3' miRNA: 3'- ggGUUAGAGC------ACGAGCa---CGUCCGCga -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 27374 | 0.68 | 0.494999 |
Target: 5'- aCCCGuuGUCUCGaccuggauaaugGCUUGgagcGCAGGCGUg -3' miRNA: 3'- -GGGU--UAGAGCa-----------CGAGCa---CGUCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 25967 | 0.68 | 0.497076 |
Target: 5'- gCCC-GUCUCG-GCaUCGaGCAGGcCGCa -3' miRNA: 3'- -GGGuUAGAGCaCG-AGCaCGUCC-GCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 41687 | 0.68 | 0.518045 |
Target: 5'- -----cCUCGUGCUCGacGCGGGCGg- -3' miRNA: 3'- ggguuaGAGCACGAGCa-CGUCCGCga -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 10431 | 0.67 | 0.560959 |
Target: 5'- aCgAcgCUCGUcgauCUCGcGCAGGCGCg -3' miRNA: 3'- gGgUuaGAGCAc---GAGCaCGUCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 18583 | 0.67 | 0.567488 |
Target: 5'- aCCCG--UUCGUGCaacaaacgaccggCGcgGCAGGCGCg -3' miRNA: 3'- -GGGUuaGAGCACGa------------GCa-CGUCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 12931 | 0.67 | 0.57185 |
Target: 5'- -aCAGUUUCGaccaaUGC-CGcacUGCAGGCGCUg -3' miRNA: 3'- ggGUUAGAGC-----ACGaGC---ACGUCCGCGA- -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 41612 | 0.67 | 0.57185 |
Target: 5'- gCCCAcgcgcucgCUCGUGCUCuGgcgGCagauugucGGGCGCg -3' miRNA: 3'- -GGGUua------GAGCACGAG-Ca--CG--------UCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 39255 | 0.66 | 0.604789 |
Target: 5'- cCCCGAg--CG-GC-CG-GCAGGCGCa -3' miRNA: 3'- -GGGUUagaGCaCGaGCaCGUCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 25809 | 0.66 | 0.615828 |
Target: 5'- gCCAucCUCG-GCgCGUGC-GGCGCa -3' miRNA: 3'- gGGUuaGAGCaCGaGCACGuCCGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 3293 | 0.66 | 0.63794 |
Target: 5'- gCCCuuUCUCcuuGUGCgcgCG-GCGGcGCGCg -3' miRNA: 3'- -GGGuuAGAG---CACGa--GCaCGUC-CGCGa -5' |
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17079 | 5' | -56.2 | NC_004333.2 | + | 39155 | 0.66 | 0.63794 |
Target: 5'- aCCGAUCUCGacgacauccUGCcgccCGUGCuGcGCGCg -3' miRNA: 3'- gGGUUAGAGC---------ACGa---GCACGuC-CGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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