miRNA display CGI


Results 41 - 60 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 29888 0.68 0.495459
Target:  5'- gGCGcgGCGAUcagcaucaacgGCCCGGUGACcg-UCGu -3'
miRNA:   3'- -CGCuaCGCUG-----------CGGGCCGCUGaugAGC- -5'
17080 3' -57.5 NC_004333.2 + 30376 0.68 0.495459
Target:  5'- gGUGGUGUcgcaGGCGCgaCGGCGGCcaGCUCGc -3'
miRNA:   3'- -CGCUACG----CUGCGg-GCCGCUGa-UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 30637 0.7 0.373021
Target:  5'- aGCGcgGCaAgGCgCGGCGugcGCUGCUCGa -3'
miRNA:   3'- -CGCuaCGcUgCGgGCCGC---UGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 30816 0.66 0.59417
Target:  5'- aGCGAUucggugaguaccucgGCGACGCCaCGGcCGA--GCUUGc -3'
miRNA:   3'- -CGCUA---------------CGCUGCGG-GCC-GCUgaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 31132 0.68 0.475363
Target:  5'- cGCGc-GCGA-GCCCGGCGAaUGCaUCGc -3'
miRNA:   3'- -CGCuaCGCUgCGGGCCGCUgAUG-AGC- -5'
17080 3' -57.5 NC_004333.2 + 31230 0.67 0.536736
Target:  5'- cCGGUcGCGACGgCCGcGCGGCgcagcgccguCUCGg -3'
miRNA:   3'- cGCUA-CGCUGCgGGC-CGCUGau--------GAGC- -5'
17080 3' -57.5 NC_004333.2 + 32292 0.68 0.465468
Target:  5'- cGCGA-GCucaagaGCUCGGCGACgUGCUCa -3'
miRNA:   3'- -CGCUaCGcug---CGGGCCGCUG-AUGAGc -5'
17080 3' -57.5 NC_004333.2 + 33401 0.68 0.455681
Target:  5'- gGCGAugccUGCGGCGCa--GCGACUGCgCGc -3'
miRNA:   3'- -CGCU----ACGCUGCGggcCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 35222 0.7 0.364485
Target:  5'- gGCGGUGCGAUGUuuuaCCGGCcuucaaacgcGGCaUGCUCa -3'
miRNA:   3'- -CGCUACGCUGCG----GGCCG----------CUG-AUGAGc -5'
17080 3' -57.5 NC_004333.2 + 36322 0.66 0.579143
Target:  5'- uGC-AUGuCGugGCUCGGCGAgguCUACUa- -3'
miRNA:   3'- -CGcUAC-GCugCGGGCCGCU---GAUGAgc -5'
17080 3' -57.5 NC_004333.2 + 36388 1.11 0.00044
Target:  5'- gGCGAUGCGACGCCCGGCGACUACUCGg -3'
miRNA:   3'- -CGCUACGCUGCGGGCCGCUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 37692 0.66 0.611416
Target:  5'- cCGGccCGGCGCgUGGCGGCUcaauggccuGCUCGa -3'
miRNA:   3'- cGCUacGCUGCGgGCCGCUGA---------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 38234 0.67 0.535689
Target:  5'- uGCGA-GCGGCGUgccaagaUCGGCGGCcgGgUCGg -3'
miRNA:   3'- -CGCUaCGCUGCG-------GGCCGCUGa-UgAGC- -5'
17080 3' -57.5 NC_004333.2 + 38782 0.69 0.390496
Target:  5'- gGUGAagGCGA-GCgCCGGCGGCUGCg-- -3'
miRNA:   3'- -CGCUa-CGCUgCG-GGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 39339 0.68 0.464484
Target:  5'- uGCGAUcGCGcgcgcguGCGCCUGcCGGCcGCUCGg -3'
miRNA:   3'- -CGCUA-CGC-------UGCGGGCcGCUGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 39720 0.7 0.381692
Target:  5'- aGCGAccuCGGCaaGCUCGGCaaaGACUGCUCGa -3'
miRNA:   3'- -CGCUac-GCUG--CGGGCCG---CUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 41298 0.66 0.579143
Target:  5'- aGCGAcgGCGACacgaCCGGCGACagguagccCUCGc -3'
miRNA:   3'- -CGCUa-CGCUGcg--GGCCGCUGau------GAGC- -5'
17080 3' -57.5 NC_004333.2 + 44379 0.68 0.495459
Target:  5'- -aGGUGCGcUGCUCGGCGGCgcgUGCgCGg -3'
miRNA:   3'- cgCUACGCuGCGGGCCGCUG---AUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 44811 0.7 0.381692
Target:  5'- aCGccGCGACGCUCGGCGAggACa-- -3'
miRNA:   3'- cGCuaCGCUGCGGGCCGCUgaUGagc -5'
17080 3' -57.5 NC_004333.2 + 45066 0.67 0.533597
Target:  5'- cGCGcgGCcGCGCCCGGgcaagaaaaCGGCggacugcgaggcgaUACUCGa -3'
miRNA:   3'- -CGCuaCGcUGCGGGCC---------GCUG--------------AUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.