miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 30816 0.66 0.59417
Target:  5'- aGCGAUucggugaguaccucgGCGACGCCaCGGcCGA--GCUUGc -3'
miRNA:   3'- -CGCUA---------------CGCUGCGG-GCC-GCUgaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 30637 0.7 0.373021
Target:  5'- aGCGcgGCaAgGCgCGGCGugcGCUGCUCGa -3'
miRNA:   3'- -CGCuaCGcUgCGgGCCGC---UGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 30376 0.68 0.495459
Target:  5'- gGUGGUGUcgcaGGCGCgaCGGCGGCcaGCUCGc -3'
miRNA:   3'- -CGCUACG----CUGCGg-GCCGCUGa-UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 29888 0.68 0.495459
Target:  5'- gGCGcgGCGAUcagcaucaacgGCCCGGUGACcg-UCGu -3'
miRNA:   3'- -CGCuaCGCUG-----------CGGGCCGCUGaugAGC- -5'
17080 3' -57.5 NC_004333.2 + 29067 0.74 0.216925
Target:  5'- cGCGAUGCGcACGCcgacCCGGCGGCcGCg-- -3'
miRNA:   3'- -CGCUACGC-UGCG----GGCCGCUGaUGagc -5'
17080 3' -57.5 NC_004333.2 + 28722 0.68 0.495459
Target:  5'- uGCGAccGCGA--UCCGGCGACUugggcGCUCa -3'
miRNA:   3'- -CGCUa-CGCUgcGGGCCGCUGA-----UGAGc -5'
17080 3' -57.5 NC_004333.2 + 28399 0.69 0.408497
Target:  5'- aCGAUGCGcAUGUUCGGUGAUUACg-- -3'
miRNA:   3'- cGCUACGC-UGCGGGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 27895 0.7 0.339697
Target:  5'- aGCGAucUGC-ACGCCggcuggcuucgUGGuCGACUACUCGg -3'
miRNA:   3'- -CGCU--ACGcUGCGG-----------GCC-GCUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 25961 0.69 0.405764
Target:  5'- gGCGAagcGCGGCGCuuGGCGcucgcgcaccaagcGCUGCUg- -3'
miRNA:   3'- -CGCUa--CGCUGCGggCCGC--------------UGAUGAgc -5'
17080 3' -57.5 NC_004333.2 + 25942 0.69 0.41769
Target:  5'- cGCGgcGCGAUG-CCGGCGGCcagUACgCGg -3'
miRNA:   3'- -CGCuaCGCUGCgGGCCGCUG---AUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 25734 0.67 0.515931
Target:  5'- cGCGuucGCGACGgCCGGCaaGACgcuUUCGa -3'
miRNA:   3'- -CGCua-CGCUGCgGGCCG--CUGau-GAGC- -5'
17080 3' -57.5 NC_004333.2 + 25305 0.68 0.455681
Target:  5'- cCGGgcCGACG-CCGGCGACUGCcgCGa -3'
miRNA:   3'- cGCUacGCUGCgGGCCGCUGAUGa-GC- -5'
17080 3' -57.5 NC_004333.2 + 24577 0.66 0.579143
Target:  5'- cGCGGUGUGAUGCUgaaaUGacCGACUAuCUCGg -3'
miRNA:   3'- -CGCUACGCUGCGG----GCc-GCUGAU-GAGC- -5'
17080 3' -57.5 NC_004333.2 + 24281 0.71 0.301156
Target:  5'- cCGAaauUGU--CGCCCGGCGACUGCgCGa -3'
miRNA:   3'- cGCU---ACGcuGCGGGCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 23658 0.67 0.547249
Target:  5'- uUGGUGgaUGAUGCUCGGCGGCgGCUUc -3'
miRNA:   3'- cGCUAC--GCUGCGGGCCGCUGaUGAGc -5'
17080 3' -57.5 NC_004333.2 + 23619 0.66 0.568459
Target:  5'- uGCGuucGCGACaGCUacgcagauCGGCGGCUACcCGa -3'
miRNA:   3'- -CGCua-CGCUG-CGG--------GCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 23047 0.69 0.399432
Target:  5'- gGCGAccgguaccGCGACGCugCCGGCGGCgaacaGCUUGc -3'
miRNA:   3'- -CGCUa-------CGCUGCG--GGCCGCUGa----UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 22183 0.72 0.26541
Target:  5'- gGCGGccgGCGGCgGUUCGGCGGCUgcggccuGCUCGa -3'
miRNA:   3'- -CGCUa--CGCUG-CGGGCCGCUGA-------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 20920 0.76 0.145588
Target:  5'- cGCGcaggauUGCaacccGACGCCCGGCGGCUACgccaCGg -3'
miRNA:   3'- -CGCu-----ACG-----CUGCGGGCCGCUGAUGa---GC- -5'
17080 3' -57.5 NC_004333.2 + 20882 0.74 0.216925
Target:  5'- uGgGcgGCGACgaGCCCGGCGcagcgcguGCUACUUGg -3'
miRNA:   3'- -CgCuaCGCUG--CGGGCCGC--------UGAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.