miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 11735 0.66 0.557825
Target:  5'- aCGAaaUGaaGCGCCUGcGCGACUACUgGc -3'
miRNA:   3'- cGCU--ACgcUGCGGGC-CGCUGAUGAgC- -5'
17080 3' -57.5 NC_004333.2 + 23619 0.66 0.568459
Target:  5'- uGCGuucGCGACaGCUacgcagauCGGCGGCUACcCGa -3'
miRNA:   3'- -CGCua-CGCUG-CGG--------GCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 36322 0.66 0.579143
Target:  5'- uGC-AUGuCGugGCUCGGCGAgguCUACUa- -3'
miRNA:   3'- -CGcUAC-GCugCGGGCCGCU---GAUGAgc -5'
17080 3' -57.5 NC_004333.2 + 24577 0.66 0.579143
Target:  5'- cGCGGUGUGAUGCUgaaaUGacCGACUAuCUCGg -3'
miRNA:   3'- -CGCUACGCUGCGG----GCc-GCUGAU-GAGC- -5'
17080 3' -57.5 NC_004333.2 + 47486 0.66 0.589869
Target:  5'- gGCGAgcgGCGAUGUagCuGCGAUUGCUUGc -3'
miRNA:   3'- -CGCUa--CGCUGCGg-GcCGCUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 3647 0.66 0.589869
Target:  5'- cGCGAUGUGGCGCacuauguggUCGGCcgacgcGCUGCgCGg -3'
miRNA:   3'- -CGCUACGCUGCG---------GGCCGc-----UGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 3455 0.67 0.505651
Target:  5'- cGCGAcgacgGCGACG-CCGGuCGACauuguuccGCUCGa -3'
miRNA:   3'- -CGCUa----CGCUGCgGGCC-GCUGa-------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 30376 0.68 0.495459
Target:  5'- gGUGGUGUcgcaGGCGCgaCGGCGGCcaGCUCGc -3'
miRNA:   3'- -CGCUACG----CUGCGg-GCCGCUGa-UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 38782 0.69 0.390496
Target:  5'- gGUGAagGCGA-GCgCCGGCGGCUGCg-- -3'
miRNA:   3'- -CGCUa-CGCUgCG-GGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 23047 0.69 0.399432
Target:  5'- gGCGAccgguaccGCGACGCugCCGGCGGCgaacaGCUUGc -3'
miRNA:   3'- -CGCUa-------CGCUGCG--GGCCGCUGa----UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 25961 0.69 0.405764
Target:  5'- gGCGAagcGCGGCGCuuGGCGcucgcgcaccaagcGCUGCUg- -3'
miRNA:   3'- -CGCUa--CGCUGCGggCCGC--------------UGAUGAgc -5'
17080 3' -57.5 NC_004333.2 + 28399 0.69 0.408497
Target:  5'- aCGAUGCGcAUGUUCGGUGAUUACg-- -3'
miRNA:   3'- cGCUACGC-UGCGGGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 10016 0.69 0.427008
Target:  5'- uGCGGUuCGACggcaaacaccuGCgCGGCGAcCUGCUCGu -3'
miRNA:   3'- -CGCUAcGCUG-----------CGgGCCGCU-GAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 18950 0.68 0.455681
Target:  5'- uCGAUGCGuucuggGCGcCCCGGCGGCaaUGCguugCGc -3'
miRNA:   3'- cGCUACGC------UGC-GGGCCGCUG--AUGa---GC- -5'
17080 3' -57.5 NC_004333.2 + 39339 0.68 0.464484
Target:  5'- uGCGAUcGCGcgcgcguGCGCCUGcCGGCcGCUCGg -3'
miRNA:   3'- -CGCUA-CGC-------UGCGGGCcGCUGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 32292 0.68 0.465468
Target:  5'- cGCGA-GCucaagaGCUCGGCGACgUGCUCa -3'
miRNA:   3'- -CGCUaCGcug---CGGGCCGCUG-AUGAGc -5'
17080 3' -57.5 NC_004333.2 + 20585 0.68 0.465468
Target:  5'- aGCGA-GCGGCGCggCGGCGGCcgGCagCGg -3'
miRNA:   3'- -CGCUaCGCUGCGg-GCCGCUGa-UGa-GC- -5'
17080 3' -57.5 NC_004333.2 + 3279 0.68 0.475363
Target:  5'- gGCGG-GCGGCGCgCCGGgcCGGCUcaccggccucguGCUCa -3'
miRNA:   3'- -CGCUaCGCUGCG-GGCC--GCUGA------------UGAGc -5'
17080 3' -57.5 NC_004333.2 + 29888 0.68 0.495459
Target:  5'- gGCGcgGCGAUcagcaucaacgGCCCGGUGACcg-UCGu -3'
miRNA:   3'- -CGCuaCGCUG-----------CGGGCCGCUGaugAGC- -5'
17080 3' -57.5 NC_004333.2 + 28722 0.68 0.495459
Target:  5'- uGCGAccGCGA--UCCGGCGACUugggcGCUCa -3'
miRNA:   3'- -CGCUa-CGCUgcGGGCCGCUGA-----UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.