miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 38234 0.67 0.535689
Target:  5'- uGCGA-GCGGCGUgccaagaUCGGCGGCcgGgUCGg -3'
miRNA:   3'- -CGCUaCGCUGCG-------GGCCGCUGa-UgAGC- -5'
17080 3' -57.5 NC_004333.2 + 45066 0.67 0.533597
Target:  5'- cGCGcgGCcGCGCCCGGgcaagaaaaCGGCggacugcgaggcgaUACUCGa -3'
miRNA:   3'- -CGCuaCGcUGCGGGCC---------GCUG--------------AUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 20006 0.67 0.526295
Target:  5'- gGCGGcuCGcCGCCCGGCG-C-GCUCGu -3'
miRNA:   3'- -CGCUacGCuGCGGGCCGCuGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 25734 0.67 0.515931
Target:  5'- cGCGuucGCGACGgCCGGCaaGACgcuUUCGa -3'
miRNA:   3'- -CGCua-CGCUGCgGGCCG--CUGau-GAGC- -5'
17080 3' -57.5 NC_004333.2 + 3455 0.67 0.505651
Target:  5'- cGCGAcgacgGCGACG-CCGGuCGACauuguuccGCUCGa -3'
miRNA:   3'- -CGCUa----CGCUGCgGGCC-GCUGa-------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 29888 0.68 0.495459
Target:  5'- gGCGcgGCGAUcagcaucaacgGCCCGGUGACcg-UCGu -3'
miRNA:   3'- -CGCuaCGCUG-----------CGGGCCGCUGaugAGC- -5'
17080 3' -57.5 NC_004333.2 + 44379 0.68 0.495459
Target:  5'- -aGGUGCGcUGCUCGGCGGCgcgUGCgCGg -3'
miRNA:   3'- cgCUACGCuGCGGGCCGCUG---AUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 28722 0.68 0.495459
Target:  5'- uGCGAccGCGA--UCCGGCGACUugggcGCUCa -3'
miRNA:   3'- -CGCUa-CGCUgcGGGCCGCUGA-----UGAGc -5'
17080 3' -57.5 NC_004333.2 + 30376 0.68 0.495459
Target:  5'- gGUGGUGUcgcaGGCGCgaCGGCGGCcaGCUCGc -3'
miRNA:   3'- -CGCUACG----CUGCGg-GCCGCUGa-UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 31132 0.68 0.475363
Target:  5'- cGCGc-GCGA-GCCCGGCGAaUGCaUCGc -3'
miRNA:   3'- -CGCuaCGCUgCGGGCCGCUgAUG-AGC- -5'
17080 3' -57.5 NC_004333.2 + 3279 0.68 0.475363
Target:  5'- gGCGG-GCGGCGCgCCGGgcCGGCUcaccggccucguGCUCa -3'
miRNA:   3'- -CGCUaCGCUGCG-GGCC--GCUGA------------UGAGc -5'
17080 3' -57.5 NC_004333.2 + 168 0.68 0.474369
Target:  5'- aCGAU-CGGCGCCUGGCGcgaguccACUGCcCGu -3'
miRNA:   3'- cGCUAcGCUGCGGGCCGC-------UGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 32292 0.68 0.465468
Target:  5'- cGCGA-GCucaagaGCUCGGCGACgUGCUCa -3'
miRNA:   3'- -CGCUaCGcug---CGGGCCGCUG-AUGAGc -5'
17080 3' -57.5 NC_004333.2 + 45972 0.68 0.465468
Target:  5'- gGCGAgGCGugGuguCCCGGCcuGCcACUCGg -3'
miRNA:   3'- -CGCUaCGCugC---GGGCCGc-UGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 20585 0.68 0.465468
Target:  5'- aGCGA-GCGGCGCggCGGCGGCcgGCagCGg -3'
miRNA:   3'- -CGCUaCGCUGCGg-GCCGCUGa-UGa-GC- -5'
17080 3' -57.5 NC_004333.2 + 39339 0.68 0.464484
Target:  5'- uGCGAUcGCGcgcgcguGCGCCUGcCGGCcGCUCGg -3'
miRNA:   3'- -CGCUA-CGC-------UGCGGGCcGCUGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 33401 0.68 0.455681
Target:  5'- gGCGAugccUGCGGCGCa--GCGACUGCgCGc -3'
miRNA:   3'- -CGCU----ACGCUGCGggcCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 25305 0.68 0.455681
Target:  5'- cCGGgcCGACG-CCGGCGACUGCcgCGa -3'
miRNA:   3'- cGCUacGCUGCgGGCCGCUGAUGa-GC- -5'
17080 3' -57.5 NC_004333.2 + 18950 0.68 0.455681
Target:  5'- uCGAUGCGuucuggGCGcCCCGGCGGCaaUGCguugCGc -3'
miRNA:   3'- cGCUACGC------UGC-GGGCCGCUG--AUGa---GC- -5'
17080 3' -57.5 NC_004333.2 + 10016 0.69 0.427008
Target:  5'- uGCGGUuCGACggcaaacaccuGCgCGGCGAcCUGCUCGu -3'
miRNA:   3'- -CGCUAcGCUG-----------CGgGCCGCU-GAUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.