miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 5' -58.4 NC_004333.2 + 45031 0.66 0.483153
Target:  5'- -gCGCGUGGCGCuGG-CGgCGCGc-- -3'
miRNA:   3'- uaGCGUACCGCGuCCuGCaGCGCaca -5'
17080 5' -58.4 NC_004333.2 + 20974 0.66 0.473016
Target:  5'- -gCGCGcGGCGCGGGcgaguggguGCGUuucgagCGCGUGg -3'
miRNA:   3'- uaGCGUaCCGCGUCC---------UGCA------GCGCACa -5'
17080 5' -58.4 NC_004333.2 + 38923 0.66 0.453072
Target:  5'- uUCGUAUGGCGCccGGuACGUgucCGaCGUGUc -3'
miRNA:   3'- uAGCGUACCGCGu-CC-UGCA---GC-GCACA- -5'
17080 5' -58.4 NC_004333.2 + 14526 0.67 0.432633
Target:  5'- -gCGUAUGGgGCAagacagcGGACGagCGUGUGUg -3'
miRNA:   3'- uaGCGUACCgCGU-------CCUGCa-GCGCACA- -5'
17080 5' -58.4 NC_004333.2 + 37295 0.67 0.414612
Target:  5'- uUCGU-UGGUGCGGGccacaGCGUCGCGcGg -3'
miRNA:   3'- uAGCGuACCGCGUCC-----UGCAGCGCaCa -5'
17080 5' -58.4 NC_004333.2 + 32278 0.67 0.414612
Target:  5'- -cCGgAUGGCGCGGGucggcggcgAUGUCGaCGUGc -3'
miRNA:   3'- uaGCgUACCGCGUCC---------UGCAGC-GCACa -5'
17080 5' -58.4 NC_004333.2 + 22429 0.67 0.413676
Target:  5'- -gCGCGUgcGGCGCAGGuuuCGUCGgcuuccuCGUGg -3'
miRNA:   3'- uaGCGUA--CCGCGUCCu--GCAGC-------GCACa -5'
17080 5' -58.4 NC_004333.2 + 39238 0.67 0.405314
Target:  5'- -gCGCAgcacgGGCgGCAGGAUGUCGUcgagaucgGUGa -3'
miRNA:   3'- uaGCGUa----CCG-CGUCCUGCAGCG--------CACa -5'
17080 5' -58.4 NC_004333.2 + 7579 0.67 0.396149
Target:  5'- --gGCAgacccauGCGCAGGACGUCcuccuGCGUGa -3'
miRNA:   3'- uagCGUac-----CGCGUCCUGCAG-----CGCACa -5'
17080 5' -58.4 NC_004333.2 + 18803 0.67 0.396149
Target:  5'- uAUCGCGcGGcCGCAGGGCG-CGUGcUGc -3'
miRNA:   3'- -UAGCGUaCC-GCGUCCUGCaGCGC-ACa -5'
17080 5' -58.4 NC_004333.2 + 13199 0.71 0.230076
Target:  5'- gAUCGU---GUGCAGGcGCGUCGCGUGg -3'
miRNA:   3'- -UAGCGuacCGCGUCC-UGCAGCGCACa -5'
17080 5' -58.4 NC_004333.2 + 36352 1.04 0.00082
Target:  5'- uAUCGCAUGGCGCAGGACGUCGCGUGUc -3'
miRNA:   3'- -UAGCGUACCGCGUCCUGCAGCGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.