Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17080 | 5' | -58.4 | NC_004333.2 | + | 45031 | 0.66 | 0.483153 |
Target: 5'- -gCGCGUGGCGCuGG-CGgCGCGc-- -3' miRNA: 3'- uaGCGUACCGCGuCCuGCaGCGCaca -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 20974 | 0.66 | 0.473016 |
Target: 5'- -gCGCGcGGCGCGGGcgaguggguGCGUuucgagCGCGUGg -3' miRNA: 3'- uaGCGUaCCGCGUCC---------UGCA------GCGCACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 32278 | 0.67 | 0.414612 |
Target: 5'- -cCGgAUGGCGCGGGucggcggcgAUGUCGaCGUGc -3' miRNA: 3'- uaGCgUACCGCGUCC---------UGCAGC-GCACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 18803 | 0.67 | 0.396149 |
Target: 5'- uAUCGCGcGGcCGCAGGGCG-CGUGcUGc -3' miRNA: 3'- -UAGCGUaCC-GCGUCCUGCaGCGC-ACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 7579 | 0.67 | 0.396149 |
Target: 5'- --gGCAgacccauGCGCAGGACGUCcuccuGCGUGa -3' miRNA: 3'- uagCGUac-----CGCGUCCUGCAG-----CGCACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 13199 | 0.71 | 0.230076 |
Target: 5'- gAUCGU---GUGCAGGcGCGUCGCGUGg -3' miRNA: 3'- -UAGCGuacCGCGUCC-UGCAGCGCACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 36352 | 1.04 | 0.00082 |
Target: 5'- uAUCGCAUGGCGCAGGACGUCGCGUGUc -3' miRNA: 3'- -UAGCGUACCGCGUCCUGCAGCGCACA- -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 39238 | 0.67 | 0.405314 |
Target: 5'- -gCGCAgcacgGGCgGCAGGAUGUCGUcgagaucgGUGa -3' miRNA: 3'- uaGCGUa----CCG-CGUCCUGCAGCG--------CACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 22429 | 0.67 | 0.413676 |
Target: 5'- -gCGCGUgcGGCGCAGGuuuCGUCGgcuuccuCGUGg -3' miRNA: 3'- uaGCGUA--CCGCGUCCu--GCAGC-------GCACa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 37295 | 0.67 | 0.414612 |
Target: 5'- uUCGU-UGGUGCGGGccacaGCGUCGCGcGg -3' miRNA: 3'- uAGCGuACCGCGUCC-----UGCAGCGCaCa -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 14526 | 0.67 | 0.432633 |
Target: 5'- -gCGUAUGGgGCAagacagcGGACGagCGUGUGUg -3' miRNA: 3'- uaGCGUACCgCGU-------CCUGCa-GCGCACA- -5' |
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17080 | 5' | -58.4 | NC_004333.2 | + | 38923 | 0.66 | 0.453072 |
Target: 5'- uUCGUAUGGCGCccGGuACGUgucCGaCGUGUc -3' miRNA: 3'- uAGCGUACCGCGu-CC-UGCA---GC-GCACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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