miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17081 3' -61 NC_004333.2 + 7328 0.66 0.418966
Target:  5'- aUCG-GCGUcuaaucGUCaGGCGuuGCCGCGAg -3'
miRNA:   3'- -AGCuCGCG------CAGcUCGUggCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 42081 0.66 0.418966
Target:  5'- aCGAGgauaGCGUCGuGCugCGCgacgaggcguguCGCGAg -3'
miRNA:   3'- aGCUCg---CGCAGCuCGugGCG------------GCGCUg -5'
17081 3' -61 NC_004333.2 + 30546 0.66 0.418966
Target:  5'- cUCGAGCGCcuucgcgaUCGucuGCcaGCCGaacaCCGCGACa -3'
miRNA:   3'- -AGCUCGCGc-------AGCu--CG--UGGC----GGCGCUG- -5'
17081 3' -61 NC_004333.2 + 45724 0.66 0.418966
Target:  5'- cUCGAGCccgGCG-CGAacGUGCCGaUCGCGAUa -3'
miRNA:   3'- -AGCUCG---CGCaGCU--CGUGGC-GGCGCUG- -5'
17081 3' -61 NC_004333.2 + 46197 0.66 0.418966
Target:  5'- cUGGGCGCGUCucGCGCCGgaucaGCGcCa -3'
miRNA:   3'- aGCUCGCGCAGcuCGUGGCgg---CGCuG- -5'
17081 3' -61 NC_004333.2 + 47512 0.66 0.418966
Target:  5'- gUCGA-UGCGUCGAacggauugGCGCCGgCgaGCGGCg -3'
miRNA:   3'- -AGCUcGCGCAGCU--------CGUGGCgG--CGCUG- -5'
17081 3' -61 NC_004333.2 + 8194 0.66 0.418053
Target:  5'- aCGGGCuCGUCGGGCAUC-CCGaacuaccUGACg -3'
miRNA:   3'- aGCUCGcGCAGCUCGUGGcGGC-------GCUG- -5'
17081 3' -61 NC_004333.2 + 46112 0.66 0.415322
Target:  5'- cCGAGCGCGgugCGcgcuacGGCAaguucgaggaucaCGCCGUGAUc -3'
miRNA:   3'- aGCUCGCGCa--GC------UCGUg------------GCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 22558 0.66 0.409893
Target:  5'- aCGAGCGCG-CGGugaaaccCGCCGUCGUcacGACa -3'
miRNA:   3'- aGCUCGCGCaGCUc------GUGGCGGCG---CUG- -5'
17081 3' -61 NC_004333.2 + 16685 0.66 0.409893
Target:  5'- ---cGCGCGgugCGgaAGCACCGCUGCa-- -3'
miRNA:   3'- agcuCGCGCa--GC--UCGUGGCGGCGcug -5'
17081 3' -61 NC_004333.2 + 12124 0.66 0.409893
Target:  5'- cCGAGCGgcaCGAGCucGCCGUCGUGGu -3'
miRNA:   3'- aGCUCGCgcaGCUCG--UGGCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 6744 0.66 0.409893
Target:  5'- uUCGAGCGCcaCG-GCGCCccgGUCGCG-Cg -3'
miRNA:   3'- -AGCUCGCGcaGCuCGUGG---CGGCGCuG- -5'
17081 3' -61 NC_004333.2 + 38460 0.66 0.409893
Target:  5'- cCGuGGCGCGacgCGAugauuGCGCUGCCGCaauggGACg -3'
miRNA:   3'- aGC-UCGCGCa--GCU-----CGUGGCGGCG-----CUG- -5'
17081 3' -61 NC_004333.2 + 16936 0.66 0.409893
Target:  5'- nCGAacagucGCcCGUCGAuCGCCuugGCCGCGACg -3'
miRNA:   3'- aGCU------CGcGCAGCUcGUGG---CGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 10655 0.66 0.409893
Target:  5'- uUCaGGCcaGC-UCGuAGCACCGCCuGCGAUg -3'
miRNA:   3'- -AGcUCG--CGcAGC-UCGUGGCGG-CGCUG- -5'
17081 3' -61 NC_004333.2 + 47221 0.66 0.404509
Target:  5'- aCGGGCGCGcuacuuucgagcggaUUGAGCAUCGCaGC-ACa -3'
miRNA:   3'- aGCUCGCGC---------------AGCUCGUGGCGgCGcUG- -5'
17081 3' -61 NC_004333.2 + 6301 0.66 0.400944
Target:  5'- aCGAGCGCGcuggUGAaaggcuGCGCaGCCGUGAg -3'
miRNA:   3'- aGCUCGCGCa---GCU------CGUGgCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 28928 0.66 0.400944
Target:  5'- gUCG-GUGCGUagCGGGCGCCGaggcaCGCGu- -3'
miRNA:   3'- -AGCuCGCGCA--GCUCGUGGCg----GCGCug -5'
17081 3' -61 NC_004333.2 + 29893 0.66 0.400944
Target:  5'- gCGcuGCGCGaUCGG--GCCGCgCGCGGCa -3'
miRNA:   3'- aGCu-CGCGC-AGCUcgUGGCG-GCGCUG- -5'
17081 3' -61 NC_004333.2 + 18951 0.66 0.400944
Target:  5'- uUCGAuGCGUucUGGGCGCC-CCgGCGGCa -3'
miRNA:   3'- -AGCU-CGCGcaGCUCGUGGcGG-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.