miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17081 3' -61 NC_004333.2 + 7328 0.66 0.418966
Target:  5'- aUCG-GCGUcuaaucGUCaGGCGuuGCCGCGAg -3'
miRNA:   3'- -AGCuCGCG------CAGcUCGUggCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 9815 0.66 0.383423
Target:  5'- aCGGGCGCGcaUCcGGCGCUcauGUCGcCGACg -3'
miRNA:   3'- aGCUCGCGC--AGcUCGUGG---CGGC-GCUG- -5'
17081 3' -61 NC_004333.2 + 17706 0.66 0.383423
Target:  5'- gCGAaCGUGUCGgccacGGCACCgGgCGCGGCc -3'
miRNA:   3'- aGCUcGCGCAGC-----UCGUGG-CgGCGCUG- -5'
17081 3' -61 NC_004333.2 + 16973 0.66 0.380839
Target:  5'- gCGGGCGCc-CGGGCACCagaucaggcagucgGCCGUGcCg -3'
miRNA:   3'- aGCUCGCGcaGCUCGUGG--------------CGGCGCuG- -5'
17081 3' -61 NC_004333.2 + 20642 0.66 0.374855
Target:  5'- gCGAGCGuCGcaaCGGcGCugCGCCaGUGGCa -3'
miRNA:   3'- aGCUCGC-GCa--GCU-CGugGCGG-CGCUG- -5'
17081 3' -61 NC_004333.2 + 29995 0.66 0.374855
Target:  5'- cCGAGCGCGagcaccaugCG-GCGCCGCuCGuCGGg -3'
miRNA:   3'- aGCUCGCGCa--------GCuCGUGGCG-GC-GCUg -5'
17081 3' -61 NC_004333.2 + 17385 0.66 0.374855
Target:  5'- gUCGAGCaGCGcaUCGAGCugC-UCGCGcaGCg -3'
miRNA:   3'- -AGCUCG-CGC--AGCUCGugGcGGCGC--UG- -5'
17081 3' -61 NC_004333.2 + 9104 0.66 0.383423
Target:  5'- ---uGCGCuGUCGAGCGCaauguCGCCGCcGAg -3'
miRNA:   3'- agcuCGCG-CAGCUCGUG-----GCGGCG-CUg -5'
17081 3' -61 NC_004333.2 + 33343 0.66 0.383423
Target:  5'- uUCGuuGCGCGagaaCGGcGCGCCGUCGUGGa -3'
miRNA:   3'- -AGCu-CGCGCa---GCU-CGUGGCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 7508 0.66 0.383423
Target:  5'- gUCGGGC-CGUCucgugcagcucuGGGCGCCGCgCGuCGAa -3'
miRNA:   3'- -AGCUCGcGCAG------------CUCGUGGCG-GC-GCUg -5'
17081 3' -61 NC_004333.2 + 2120 0.66 0.391244
Target:  5'- cCGGGCucuaucgcgcggGCGUCGAcGUgaucgauGCgGCCGUGACg -3'
miRNA:   3'- aGCUCG------------CGCAGCU-CG-------UGgCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 15601 0.66 0.398283
Target:  5'- cUCGAugcccgcuaacaucGCGC-UUGAcGCGCCGCCgGUGACc -3'
miRNA:   3'- -AGCU--------------CGCGcAGCU-CGUGGCGG-CGCUG- -5'
17081 3' -61 NC_004333.2 + 47512 0.66 0.418966
Target:  5'- gUCGA-UGCGUCGAacggauugGCGCCGgCgaGCGGCg -3'
miRNA:   3'- -AGCUcGCGCAGCU--------CGUGGCgG--CGCUG- -5'
17081 3' -61 NC_004333.2 + 8194 0.66 0.418053
Target:  5'- aCGGGCuCGUCGGGCAUC-CCGaacuaccUGACg -3'
miRNA:   3'- aGCUCGcGCAGCUCGUGGcGGC-------GCUG- -5'
17081 3' -61 NC_004333.2 + 16936 0.66 0.409893
Target:  5'- nCGAacagucGCcCGUCGAuCGCCuugGCCGCGACg -3'
miRNA:   3'- aGCU------CGcGCAGCUcGUGG---CGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 10655 0.66 0.409893
Target:  5'- uUCaGGCcaGC-UCGuAGCACCGCCuGCGAUg -3'
miRNA:   3'- -AGcUCG--CGcAGC-UCGUGGCGG-CGCUG- -5'
17081 3' -61 NC_004333.2 + 31194 0.66 0.400944
Target:  5'- cCGGGCucGCGcgCGAGCAgcaacuCgCGCCGCuGACg -3'
miRNA:   3'- aGCUCG--CGCa-GCUCGU------G-GCGGCG-CUG- -5'
17081 3' -61 NC_004333.2 + 18951 0.66 0.400944
Target:  5'- uUCGAuGCGUucUGGGCGCC-CCgGCGGCa -3'
miRNA:   3'- -AGCU-CGCGcaGCUCGUGGcGG-CGCUG- -5'
17081 3' -61 NC_004333.2 + 32985 0.66 0.400944
Target:  5'- ---uGUGCG-CG-GCACCGUCGCGGg -3'
miRNA:   3'- agcuCGCGCaGCuCGUGGCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 31259 0.66 0.400056
Target:  5'- gUCG-GCGuUGUCGAguacggcGCGCCGUCuggGCGGCg -3'
miRNA:   3'- -AGCuCGC-GCAGCU-------CGUGGCGG---CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.