Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17081 | 3' | -61 | NC_004333.2 | + | 37394 | 1.08 | 0.000292 |
Target: 5'- uUCGAGCGCGUCGAGCACCGCCGCGACc -3' miRNA: 3'- -AGCUCGCGCAGCUCGUGGCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 19934 | 0.85 | 0.016209 |
Target: 5'- aCGAGCGCGcCGGGCggcgaGCCGCCGCGAg -3' miRNA: 3'- aGCUCGCGCaGCUCG-----UGGCGGCGCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 13748 | 0.78 | 0.059857 |
Target: 5'- gUCGAGCGCGUaggacgcCGcGCGCCGCucgCGCGGCg -3' miRNA: 3'- -AGCUCGCGCA-------GCuCGUGGCG---GCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 6723 | 0.78 | 0.061733 |
Target: 5'- cUCGAGCGCGcCGAGCgcGCUGCCgagcGCGAUc -3' miRNA: 3'- -AGCUCGCGCaGCUCG--UGGCGG----CGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 37195 | 0.77 | 0.067142 |
Target: 5'- aCGAcGCGCGccggugcCGAGUuCCGCCGCGACg -3' miRNA: 3'- aGCU-CGCGCa------GCUCGuGGCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 13859 | 0.77 | 0.069045 |
Target: 5'- gUCGAGCGCaUUGAGCG-CGCCGCGcCg -3' miRNA: 3'- -AGCUCGCGcAGCUCGUgGCGGCGCuG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 15872 | 0.77 | 0.069045 |
Target: 5'- gCGAGCcCG-CGAGCgaGCCGCCGUGACc -3' miRNA: 3'- aGCUCGcGCaGCUCG--UGGCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 19623 | 0.77 | 0.071 |
Target: 5'- gCGAGCGCGgCGAGCGCgGCCGaCG-Cu -3' miRNA: 3'- aGCUCGCGCaGCUCGUGgCGGC-GCuG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 17163 | 0.77 | 0.075069 |
Target: 5'- gUCGuGCGCGUCGAcaagGCCGCUGCGAg -3' miRNA: 3'- -AGCuCGCGCAGCUcg--UGGCGGCGCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 35966 | 0.76 | 0.081596 |
Target: 5'- uUCaAGC-CGUCGAGCACCGUgcuCGCGACc -3' miRNA: 3'- -AGcUCGcGCAGCUCGUGGCG---GCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 37735 | 0.75 | 0.091144 |
Target: 5'- aCGAGCGgGUCGGGCGCgCGCU-CGAUg -3' miRNA: 3'- aGCUCGCgCAGCUCGUG-GCGGcGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 13049 | 0.75 | 0.093692 |
Target: 5'- gUCGAuGCGCGcCGAGCugaucaACCGCuauCGCGACa -3' miRNA: 3'- -AGCU-CGCGCaGCUCG------UGGCG---GCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 27470 | 0.75 | 0.093692 |
Target: 5'- cUCGAGCGUGUgcUGAaCgACCGCCGCGAUc -3' miRNA: 3'- -AGCUCGCGCA--GCUcG-UGGCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 32953 | 0.75 | 0.096307 |
Target: 5'- gCGuGCGCGUCGGGCAgCuuUGCGACu -3' miRNA: 3'- aGCuCGCGCAGCUCGUgGcgGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 694 | 0.75 | 0.096307 |
Target: 5'- gUGAGCGCGaUCGuGcCGCCGCCcGCGAg -3' miRNA: 3'- aGCUCGCGC-AGCuC-GUGGCGG-CGCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 21760 | 0.75 | 0.101747 |
Target: 5'- -aGAGCGCGUCGAGCugCucgGCCGUc-- -3' miRNA: 3'- agCUCGCGCAGCUCGugG---CGGCGcug -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 29954 | 0.74 | 0.113503 |
Target: 5'- gCGAaaaGCGCGUgcCGAGCGCgGCCGCG-Cu -3' miRNA: 3'- aGCU---CGCGCA--GCUCGUGgCGGCGCuG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 9064 | 0.74 | 0.113503 |
Target: 5'- gCGAacGcCGCGUCGGuCGCCGCCGCGcACg -3' miRNA: 3'- aGCU--C-GCGCAGCUcGUGGCGGCGC-UG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 38367 | 0.74 | 0.116635 |
Target: 5'- aUCGAcgcgcugucGCGUGUCGGguGCGCCGgCGUGACg -3' miRNA: 3'- -AGCU---------CGCGCAGCU--CGUGGCgGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 25227 | 0.74 | 0.123142 |
Target: 5'- gCGAGCGUGUCGAucggagGCAUCgggcagGCCGCGAa -3' miRNA: 3'- aGCUCGCGCAGCU------CGUGG------CGGCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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