Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17081 | 3' | -61 | NC_004333.2 | + | 18951 | 0.66 | 0.400944 |
Target: 5'- uUCGAuGCGUucUGGGCGCC-CCgGCGGCa -3' miRNA: 3'- -AGCU-CGCGcaGCUCGUGGcGG-CGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 31194 | 0.66 | 0.400944 |
Target: 5'- cCGGGCucGCGcgCGAGCAgcaacuCgCGCCGCuGACg -3' miRNA: 3'- aGCUCG--CGCa-GCUCGU------G-GCGGCG-CUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 31259 | 0.66 | 0.400056 |
Target: 5'- gUCG-GCGuUGUCGAguacggcGCGCCGUCuggGCGGCg -3' miRNA: 3'- -AGCuCGC-GCAGCU-------CGUGGCGG---CGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 15601 | 0.66 | 0.398283 |
Target: 5'- cUCGAugcccgcuaacaucGCGC-UUGAcGCGCCGCCgGUGACc -3' miRNA: 3'- -AGCU--------------CGCGcAGCU-CGUGGCGG-CGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 20206 | 0.66 | 0.39212 |
Target: 5'- aUGGGCGCGgcUCGcgcuuucguggcGGCgAUCGaCCGCGACu -3' miRNA: 3'- aGCUCGCGC--AGC------------UCG-UGGC-GGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 15310 | 0.66 | 0.39212 |
Target: 5'- cCGGGCGCuugccGUCGAGCAggUCGUCGaUGAa -3' miRNA: 3'- aGCUCGCG-----CAGCUCGU--GGCGGC-GCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 2120 | 0.66 | 0.391244 |
Target: 5'- cCGGGCucuaucgcgcggGCGUCGAcGUgaucgauGCgGCCGUGACg -3' miRNA: 3'- aGCUCG------------CGCAGCU-CG-------UGgCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 9104 | 0.66 | 0.383423 |
Target: 5'- ---uGCGCuGUCGAGCGCaauguCGCCGCcGAg -3' miRNA: 3'- agcuCGCG-CAGCUCGUG-----GCGGCG-CUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 33343 | 0.66 | 0.383423 |
Target: 5'- uUCGuuGCGCGagaaCGGcGCGCCGUCGUGGa -3' miRNA: 3'- -AGCu-CGCGCa---GCU-CGUGGCGGCGCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 37883 | 0.66 | 0.383423 |
Target: 5'- gUGAGCGCuUCG-GC-CUGCuCGCGAUu -3' miRNA: 3'- aGCUCGCGcAGCuCGuGGCG-GCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 17706 | 0.66 | 0.383423 |
Target: 5'- gCGAaCGUGUCGgccacGGCACCgGgCGCGGCc -3' miRNA: 3'- aGCUcGCGCAGC-----UCGUGG-CgGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 7508 | 0.66 | 0.383423 |
Target: 5'- gUCGGGC-CGUCucgugcagcucuGGGCGCCGCgCGuCGAa -3' miRNA: 3'- -AGCUCGcGCAG------------CUCGUGGCG-GC-GCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 9815 | 0.66 | 0.383423 |
Target: 5'- aCGGGCGCGcaUCcGGCGCUcauGUCGcCGACg -3' miRNA: 3'- aGCUCGCGC--AGcUCGUGG---CGGC-GCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 16973 | 0.66 | 0.380839 |
Target: 5'- gCGGGCGCc-CGGGCACCagaucaggcagucgGCCGUGcCg -3' miRNA: 3'- aGCUCGCGcaGCUCGUGG--------------CGGCGCuG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 20642 | 0.66 | 0.374855 |
Target: 5'- gCGAGCGuCGcaaCGGcGCugCGCCaGUGGCa -3' miRNA: 3'- aGCUCGC-GCa--GCU-CGugGCGG-CGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 17385 | 0.66 | 0.374855 |
Target: 5'- gUCGAGCaGCGcaUCGAGCugC-UCGCGcaGCg -3' miRNA: 3'- -AGCUCG-CGC--AGCUCGugGcGGCGC--UG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 29995 | 0.66 | 0.374855 |
Target: 5'- cCGAGCGCGagcaccaugCG-GCGCCGCuCGuCGGg -3' miRNA: 3'- aGCUCGCGCa--------GCuCGUGGCG-GC-GCUg -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 25445 | 0.67 | 0.369777 |
Target: 5'- cCGGGCGUGcCGguuacgacgacacccGGgAUCGUCGCGGCg -3' miRNA: 3'- aGCUCGCGCaGC---------------UCgUGGCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 45301 | 0.67 | 0.369777 |
Target: 5'- cUCGAG-GCGUUcgagaaGGGCAucgacgguuacaagcUCGCCGCGAUg -3' miRNA: 3'- -AGCUCgCGCAG------CUCGU---------------GGCGGCGCUG- -5' |
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17081 | 3' | -61 | NC_004333.2 | + | 30848 | 0.67 | 0.366418 |
Target: 5'- -aGAaCGCGUCGAGCGCC-UgGCGGu -3' miRNA: 3'- agCUcGCGCAGCUCGUGGcGgCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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