miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17081 3' -61 NC_004333.2 + 694 0.75 0.096307
Target:  5'- gUGAGCGCGaUCGuGcCGCCGCCcGCGAg -3'
miRNA:   3'- aGCUCGCGC-AGCuC-GUGGCGG-CGCUg -5'
17081 3' -61 NC_004333.2 + 1117 0.67 0.333996
Target:  5'- gUCGcGCGCGaagUCGGugccGUGCUGCgCGCGACg -3'
miRNA:   3'- -AGCuCGCGC---AGCU----CGUGGCG-GCGCUG- -5'
17081 3' -61 NC_004333.2 + 1254 0.67 0.326225
Target:  5'- aUCGAG-GCGggcaaagaccCGaAGCaaGCCGCCGCGAUc -3'
miRNA:   3'- -AGCUCgCGCa---------GC-UCG--UGGCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 1716 0.67 0.341901
Target:  5'- gCGcAGCGCauucaGGGCuacGCCGCCGaCGACg -3'
miRNA:   3'- aGC-UCGCGcag--CUCG---UGGCGGC-GCUG- -5'
17081 3' -61 NC_004333.2 + 2120 0.66 0.391244
Target:  5'- cCGGGCucuaucgcgcggGCGUCGAcGUgaucgauGCgGCCGUGACg -3'
miRNA:   3'- aGCUCG------------CGCAGCU-CG-------UGgCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 2765 0.67 0.366418
Target:  5'- aUCG-GCcUGUCGGcCGCCGCCggcGCGACg -3'
miRNA:   3'- -AGCuCGcGCAGCUcGUGGCGG---CGCUG- -5'
17081 3' -61 NC_004333.2 + 2996 0.67 0.358112
Target:  5'- -aGAcGCuCGcCGGcGCGuCCGCCGCGACg -3'
miRNA:   3'- agCU-CGcGCaGCU-CGU-GGCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 3561 0.69 0.261698
Target:  5'- gCGcAGCGCGUCGGccgaccacauaguGCGCCacaUCGCGGCg -3'
miRNA:   3'- aGC-UCGCGCAGCU-------------CGUGGc--GGCGCUG- -5'
17081 3' -61 NC_004333.2 + 3720 0.67 0.326225
Target:  5'- gUUGAGCGCcUCGcGCACCcCCG-GGCg -3'
miRNA:   3'- -AGCUCGCGcAGCuCGUGGcGGCgCUG- -5'
17081 3' -61 NC_004333.2 + 4855 0.68 0.289398
Target:  5'- aCGcGCGCGcCGuGCcgaugccgcuGCCGCCGCuGACc -3'
miRNA:   3'- aGCuCGCGCaGCuCG----------UGGCGGCG-CUG- -5'
17081 3' -61 NC_004333.2 + 5204 0.67 0.341901
Target:  5'- -aGGcGCgGCGUCG-GCACCGUCGCa-- -3'
miRNA:   3'- agCU-CG-CGCAGCuCGUGGCGGCGcug -5'
17081 3' -61 NC_004333.2 + 6301 0.66 0.400944
Target:  5'- aCGAGCGCGcuggUGAaaggcuGCGCaGCCGUGAg -3'
miRNA:   3'- aGCUCGCGCa---GCU------CGUGgCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 6662 0.72 0.165309
Target:  5'- cUCG-GCGCGcUCGAGCAggcgcgcauCCGCCGCu-- -3'
miRNA:   3'- -AGCuCGCGC-AGCUCGU---------GGCGGCGcug -5'
17081 3' -61 NC_004333.2 + 6670 0.67 0.34994
Target:  5'- gCG-GCGCugggCGGcGCGCCGUgGCGGCg -3'
miRNA:   3'- aGCuCGCGca--GCU-CGUGGCGgCGCUG- -5'
17081 3' -61 NC_004333.2 + 6723 0.78 0.061733
Target:  5'- cUCGAGCGCGcCGAGCgcGCUGCCgagcGCGAUc -3'
miRNA:   3'- -AGCUCGCGCaGCUCG--UGGCGG----CGCUG- -5'
17081 3' -61 NC_004333.2 + 6744 0.66 0.409893
Target:  5'- uUCGAGCGCcaCG-GCGCCccgGUCGCG-Cg -3'
miRNA:   3'- -AGCUCGCGcaGCuCGUGG---CGGCGCuG- -5'
17081 3' -61 NC_004333.2 + 6826 0.68 0.289398
Target:  5'- cUCGAgGCGCG-CGAccGgGgCGCCGUGGCg -3'
miRNA:   3'- -AGCU-CGCGCaGCU--CgUgGCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 6897 0.69 0.243436
Target:  5'- aCGAGUGCcccgccgGAGUGCCGCCguuGCGACa -3'
miRNA:   3'- aGCUCGCGcag----CUCGUGGCGG---CGCUG- -5'
17081 3' -61 NC_004333.2 + 7328 0.66 0.418966
Target:  5'- aUCG-GCGUcuaaucGUCaGGCGuuGCCGCGAg -3'
miRNA:   3'- -AGCuCGCG------CAGcUCGUggCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 7508 0.66 0.383423
Target:  5'- gUCGGGC-CGUCucgugcagcucuGGGCGCCGCgCGuCGAa -3'
miRNA:   3'- -AGCUCGcGCAG------------CUCGUGGCG-GC-GCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.