miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17081 3' -61 NC_004333.2 + 19934 0.85 0.016209
Target:  5'- aCGAGCGCGcCGGGCggcgaGCCGCCGCGAg -3'
miRNA:   3'- aGCUCGCGCaGCUCG-----UGGCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 11223 0.72 0.150246
Target:  5'- uUCGGGCGCGgcuccuugccggcgcUCGAGUGCUGCCaGaCGGCc -3'
miRNA:   3'- -AGCUCGCGC---------------AGCUCGUGGCGG-C-GCUG- -5'
17081 3' -61 NC_004333.2 + 32205 0.72 0.165309
Target:  5'- aCGAGCGCGaUGAGCACguCGCCGa-GCg -3'
miRNA:   3'- aGCUCGCGCaGCUCGUG--GCGGCgcUG- -5'
17081 3' -61 NC_004333.2 + 46197 0.66 0.418966
Target:  5'- cUGGGCGCGUCucGCGCCGgaucaGCGcCa -3'
miRNA:   3'- aGCUCGCGCAGcuCGUGGCgg---CGCuG- -5'
17081 3' -61 NC_004333.2 + 13859 0.77 0.069045
Target:  5'- gUCGAGCGCaUUGAGCG-CGCCGCGcCg -3'
miRNA:   3'- -AGCUCGCGcAGCUCGUgGCGGCGCuG- -5'
17081 3' -61 NC_004333.2 + 19623 0.77 0.071
Target:  5'- gCGAGCGCGgCGAGCGCgGCCGaCG-Cu -3'
miRNA:   3'- aGCUCGCGCaGCUCGUGgCGGC-GCuG- -5'
17081 3' -61 NC_004333.2 + 35966 0.76 0.081596
Target:  5'- uUCaAGC-CGUCGAGCACCGUgcuCGCGACc -3'
miRNA:   3'- -AGcUCGcGCAGCUCGUGGCG---GCGCUG- -5'
17081 3' -61 NC_004333.2 + 27470 0.75 0.093692
Target:  5'- cUCGAGCGUGUgcUGAaCgACCGCCGCGAUc -3'
miRNA:   3'- -AGCUCGCGCA--GCUcG-UGGCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 29954 0.74 0.113503
Target:  5'- gCGAaaaGCGCGUgcCGAGCGCgGCCGCG-Cu -3'
miRNA:   3'- aGCU---CGCGCA--GCUCGUGgCGGCGCuG- -5'
17081 3' -61 NC_004333.2 + 21001 0.73 0.140908
Target:  5'- uUCGAGCGCGU--GGCAgCCGUCacggGCGACg -3'
miRNA:   3'- -AGCUCGCGCAgcUCGU-GGCGG----CGCUG- -5'
17081 3' -61 NC_004333.2 + 25520 0.74 0.123142
Target:  5'- cCGAGCGCGUCuuGGUACgCGCCGCu-- -3'
miRNA:   3'- aGCUCGCGCAGc-UCGUG-GCGGCGcug -5'
17081 3' -61 NC_004333.2 + 694 0.75 0.096307
Target:  5'- gUGAGCGCGaUCGuGcCGCCGCCcGCGAg -3'
miRNA:   3'- aGCUCGCGC-AGCuC-GUGGCGG-CGCUg -5'
17081 3' -61 NC_004333.2 + 13748 0.78 0.059857
Target:  5'- gUCGAGCGCGUaggacgcCGcGCGCCGCucgCGCGGCg -3'
miRNA:   3'- -AGCUCGCGCA-------GCuCGUGGCG---GCGCUG- -5'
17081 3' -61 NC_004333.2 + 20570 0.73 0.128936
Target:  5'- gUCG-GCGCGUCGGgucGCGCCGUgguguuucugcaggCGCGGCu -3'
miRNA:   3'- -AGCuCGCGCAGCU---CGUGGCG--------------GCGCUG- -5'
17081 3' -61 NC_004333.2 + 37195 0.77 0.067142
Target:  5'- aCGAcGCGCGccggugcCGAGUuCCGCCGCGACg -3'
miRNA:   3'- aGCU-CGCGCa------GCUCGuGGCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 32953 0.75 0.096307
Target:  5'- gCGuGCGCGUCGGGCAgCuuUGCGACu -3'
miRNA:   3'- aGCuCGCGCAGCUCGUgGcgGCGCUG- -5'
17081 3' -61 NC_004333.2 + 46344 0.73 0.137177
Target:  5'- gCGGGCGcCGUUauGCGCCGCUGCGGa -3'
miRNA:   3'- aGCUCGC-GCAGcuCGUGGCGGCGCUg -5'
17081 3' -61 NC_004333.2 + 6662 0.72 0.165309
Target:  5'- cUCG-GCGCGcUCGAGCAggcgcgcauCCGCCGCu-- -3'
miRNA:   3'- -AGCuCGCGC-AGCUCGU---------GGCGGCGcug -5'
17081 3' -61 NC_004333.2 + 15872 0.77 0.069045
Target:  5'- gCGAGCcCG-CGAGCgaGCCGCCGUGACc -3'
miRNA:   3'- aGCUCGcGCaGCUCG--UGGCGGCGCUG- -5'
17081 3' -61 NC_004333.2 + 17163 0.77 0.075069
Target:  5'- gUCGuGCGCGUCGAcaagGCCGCUGCGAg -3'
miRNA:   3'- -AGCuCGCGCAGCUcg--UGGCGGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.