miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17081 5' -53.4 NC_004333.2 + 14272 0.66 0.822004
Target:  5'- gGCGgcaCGCCUUCGAgCAUCGggaagugcuucuucaGCauGUCGAUc -3'
miRNA:   3'- -CGCa--GCGGAAGCU-GUAGC---------------UG--CAGCUA- -5'
17081 5' -53.4 NC_004333.2 + 22108 0.66 0.808778
Target:  5'- cUGUcCGCCcgCGugAUCuGCGUCGAg -3'
miRNA:   3'- cGCA-GCGGaaGCugUAGcUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 32209 0.66 0.808778
Target:  5'- -aGUCGCCgcguUCGACGugcuggcgcuuaUCG-CGUCGGa -3'
miRNA:   3'- cgCAGCGGa---AGCUGU------------AGCuGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 32601 0.66 0.808778
Target:  5'- aGCG-CGCCgcgCGACGUCGGCa----- -3'
miRNA:   3'- -CGCaGCGGaa-GCUGUAGCUGcagcua -5'
17081 5' -53.4 NC_004333.2 + 38590 0.66 0.799101
Target:  5'- cGCGUCGCacagaUCGACAaaGAacgUGUCGAg -3'
miRNA:   3'- -CGCAGCGga---AGCUGUagCU---GCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 47537 0.66 0.799101
Target:  5'- gGCaGUCGCCgcCGGCGcguugcuagUCGauGCGUCGAa -3'
miRNA:   3'- -CG-CAGCGGaaGCUGU---------AGC--UGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 7410 0.66 0.799101
Target:  5'- cGUGUCcuuGCCUUCGACGcgCGGCGcccaGAg -3'
miRNA:   3'- -CGCAG---CGGAAGCUGUa-GCUGCag--CUa -5'
17081 5' -53.4 NC_004333.2 + 38521 0.66 0.789245
Target:  5'- cGCGUCGCgCcacggaUCGACAaaguUCGACG-CGGc -3'
miRNA:   3'- -CGCAGCG-Ga-----AGCUGU----AGCUGCaGCUa -5'
17081 5' -53.4 NC_004333.2 + 2103 0.66 0.779221
Target:  5'- gGCGUCGaCgUgaucgaugCGGCcgUGACGUCGGg -3'
miRNA:   3'- -CGCAGC-GgAa-------GCUGuaGCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 28042 0.66 0.779221
Target:  5'- cGUGUCGC--UCGugAUCGGCGUa--- -3'
miRNA:   3'- -CGCAGCGgaAGCugUAGCUGCAgcua -5'
17081 5' -53.4 NC_004333.2 + 22172 0.66 0.779221
Target:  5'- uUGUCGCCggCGGCGgccggCGGCGguUCGGc -3'
miRNA:   3'- cGCAGCGGaaGCUGUa----GCUGC--AGCUa -5'
17081 5' -53.4 NC_004333.2 + 30455 0.67 0.758716
Target:  5'- -gGUCGCUucgacgUUCGGCAUCG-CgGUCGAc -3'
miRNA:   3'- cgCAGCGG------AAGCUGUAGCuG-CAGCUa -5'
17081 5' -53.4 NC_004333.2 + 26390 0.67 0.757676
Target:  5'- cGCGUCGCacaaauccugUCGucgaccggcuuucGCAUCGACGgcgCGGUg -3'
miRNA:   3'- -CGCAGCGga--------AGC-------------UGUAGCUGCa--GCUA- -5'
17081 5' -53.4 NC_004333.2 + 5195 0.67 0.748258
Target:  5'- --aUCGCCUgcaGGCG-CGGCGUCGGc -3'
miRNA:   3'- cgcAGCGGAag-CUGUaGCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 24352 0.67 0.745097
Target:  5'- cGCaGUCGCCgggCGACAauuucggguucuuuUCGACGggCGGc -3'
miRNA:   3'- -CG-CAGCGGaa-GCUGU--------------AGCUGCa-GCUa -5'
17081 5' -53.4 NC_004333.2 + 45187 0.67 0.73768
Target:  5'- cGCGaUCGCCgcgcaGACA--GGCGUCGAg -3'
miRNA:   3'- -CGC-AGCGGaag--CUGUagCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 15088 0.67 0.73768
Target:  5'- gGCGa-GUUUcgCGGCGUCGGCGUCGGc -3'
miRNA:   3'- -CGCagCGGAa-GCUGUAGCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 25374 0.67 0.726992
Target:  5'- gGCaGUCGCCggcgUCGGCccgguugCGACGcCGAa -3'
miRNA:   3'- -CG-CAGCGGa---AGCUGua-----GCUGCaGCUa -5'
17081 5' -53.4 NC_004333.2 + 3446 0.67 0.726992
Target:  5'- gGCGaCGCCggUCGACAUUGuucCGcUCGAUu -3'
miRNA:   3'- -CGCaGCGGa-AGCUGUAGCu--GC-AGCUA- -5'
17081 5' -53.4 NC_004333.2 + 11433 0.68 0.693298
Target:  5'- aCGUCGCCUUCGACcgcugUGugGUauuccugCGAg -3'
miRNA:   3'- cGCAGCGGAAGCUGua---GCugCA-------GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.