Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17081 | 5' | -53.4 | NC_004333.2 | + | 22108 | 0.66 | 0.808778 |
Target: 5'- cUGUcCGCCcgCGugAUCuGCGUCGAg -3' miRNA: 3'- cGCA-GCGGaaGCugUAGcUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 22172 | 0.66 | 0.779221 |
Target: 5'- uUGUCGCCggCGGCGgccggCGGCGguUCGGc -3' miRNA: 3'- cGCAGCGGaaGCUGUa----GCUGC--AGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 28042 | 0.66 | 0.779221 |
Target: 5'- cGUGUCGC--UCGugAUCGGCGUa--- -3' miRNA: 3'- -CGCAGCGgaAGCugUAGCUGCAgcua -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 7410 | 0.66 | 0.799101 |
Target: 5'- cGUGUCcuuGCCUUCGACGcgCGGCGcccaGAg -3' miRNA: 3'- -CGCAG---CGGAAGCUGUa-GCUGCag--CUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 14272 | 0.66 | 0.822004 |
Target: 5'- gGCGgcaCGCCUUCGAgCAUCGggaagugcuucuucaGCauGUCGAUc -3' miRNA: 3'- -CGCa--GCGGAAGCU-GUAGC---------------UG--CAGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 2103 | 0.66 | 0.779221 |
Target: 5'- gGCGUCGaCgUgaucgaugCGGCcgUGACGUCGGg -3' miRNA: 3'- -CGCAGC-GgAa-------GCUGuaGCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 38521 | 0.66 | 0.789245 |
Target: 5'- cGCGUCGCgCcacggaUCGACAaaguUCGACG-CGGc -3' miRNA: 3'- -CGCAGCG-Ga-----AGCUGU----AGCUGCaGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 47537 | 0.66 | 0.799101 |
Target: 5'- gGCaGUCGCCgcCGGCGcguugcuagUCGauGCGUCGAa -3' miRNA: 3'- -CG-CAGCGGaaGCUGU---------AGC--UGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 38590 | 0.66 | 0.799101 |
Target: 5'- cGCGUCGCacagaUCGACAaaGAacgUGUCGAg -3' miRNA: 3'- -CGCAGCGga---AGCUGUagCU---GCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 32209 | 0.66 | 0.808778 |
Target: 5'- -aGUCGCCgcguUCGACGugcuggcgcuuaUCG-CGUCGGa -3' miRNA: 3'- cgCAGCGGa---AGCUGU------------AGCuGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 32601 | 0.66 | 0.808778 |
Target: 5'- aGCG-CGCCgcgCGACGUCGGCa----- -3' miRNA: 3'- -CGCaGCGGaa-GCUGUAGCUGcagcua -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 5195 | 0.67 | 0.748258 |
Target: 5'- --aUCGCCUgcaGGCG-CGGCGUCGGc -3' miRNA: 3'- cgcAGCGGAag-CUGUaGCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 25374 | 0.67 | 0.726992 |
Target: 5'- gGCaGUCGCCggcgUCGGCccgguugCGACGcCGAa -3' miRNA: 3'- -CG-CAGCGGa---AGCUGua-----GCUGCaGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 3446 | 0.67 | 0.726992 |
Target: 5'- gGCGaCGCCggUCGACAUUGuucCGcUCGAUu -3' miRNA: 3'- -CGCaGCGGa-AGCUGUAGCu--GC-AGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 45187 | 0.67 | 0.73768 |
Target: 5'- cGCGaUCGCCgcgcaGACA--GGCGUCGAg -3' miRNA: 3'- -CGC-AGCGGaag--CUGUagCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 15088 | 0.67 | 0.73768 |
Target: 5'- gGCGa-GUUUcgCGGCGUCGGCGUCGGc -3' miRNA: 3'- -CGCagCGGAa-GCUGUAGCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 24352 | 0.67 | 0.745097 |
Target: 5'- cGCaGUCGCCgggCGACAauuucggguucuuuUCGACGggCGGc -3' miRNA: 3'- -CG-CAGCGGaa-GCUGU--------------AGCUGCa-GCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 26390 | 0.67 | 0.757676 |
Target: 5'- cGCGUCGCacaaauccugUCGucgaccggcuuucGCAUCGACGgcgCGGUg -3' miRNA: 3'- -CGCAGCGga--------AGC-------------UGUAGCUGCa--GCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 30455 | 0.67 | 0.758716 |
Target: 5'- -gGUCGCUucgacgUUCGGCAUCG-CgGUCGAc -3' miRNA: 3'- cgCAGCGG------AAGCUGUAGCuG-CAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 20713 | 0.68 | 0.683391 |
Target: 5'- gGCGcagCGCCguugCGACGcUCG-CGUCGAa -3' miRNA: 3'- -CGCa--GCGGaa--GCUGU-AGCuGCAGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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