Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17081 | 5' | -53.4 | NC_004333.2 | + | 2103 | 0.66 | 0.779221 |
Target: 5'- gGCGUCGaCgUgaucgaugCGGCcgUGACGUCGGg -3' miRNA: 3'- -CGCAGC-GgAa-------GCUGuaGCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 2888 | 0.71 | 0.507515 |
Target: 5'- aCGUCGCCggauUUCGugGUCG-CGUaCGAUg -3' miRNA: 3'- cGCAGCGG----AAGCugUAGCuGCA-GCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 3446 | 0.67 | 0.726992 |
Target: 5'- gGCGaCGCCggUCGACAUUGuucCGcUCGAUu -3' miRNA: 3'- -CGCaGCGGa-AGCUGUAGCu--GC-AGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 5195 | 0.67 | 0.748258 |
Target: 5'- --aUCGCCUgcaGGCG-CGGCGUCGGc -3' miRNA: 3'- cgcAGCGGAag-CUGUaGCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 7410 | 0.66 | 0.799101 |
Target: 5'- cGUGUCcuuGCCUUCGACGcgCGGCGcccaGAg -3' miRNA: 3'- -CGCAG---CGGAAGCUGUa-GCUGCag--CUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 9327 | 0.7 | 0.561386 |
Target: 5'- uCGUUGUCUUCGGCAcuuucaugcUCGuCGUCGGc -3' miRNA: 3'- cGCAGCGGAAGCUGU---------AGCuGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 11433 | 0.68 | 0.693298 |
Target: 5'- aCGUCGCCUUCGACcgcugUGugGUauuccugCGAg -3' miRNA: 3'- cGCAGCGGAAGCUGua---GCugCA-------GCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 12745 | 0.68 | 0.672336 |
Target: 5'- uUGUCGCUgUUCGGCGcggUCGAccCGUCGAUc -3' miRNA: 3'- cGCAGCGG-AAGCUGU---AGCU--GCAGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 14272 | 0.66 | 0.822004 |
Target: 5'- gGCGgcaCGCCUUCGAgCAUCGggaagugcuucuucaGCauGUCGAUc -3' miRNA: 3'- -CGCa--GCGGAAGCU-GUAGC---------------UG--CAGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 14963 | 0.68 | 0.683391 |
Target: 5'- uCGUCGCgCgUCGAUGauacCGACGUCGAUc -3' miRNA: 3'- cGCAGCG-GaAGCUGUa---GCUGCAGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 15088 | 0.67 | 0.73768 |
Target: 5'- gGCGa-GUUUcgCGGCGUCGGCGUCGGc -3' miRNA: 3'- -CGCagCGGAa-GCUGUAGCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 18413 | 0.69 | 0.638982 |
Target: 5'- aGCGcaaCGCCUcgCGAUcggCGGCGUCGAc -3' miRNA: 3'- -CGCa--GCGGAa-GCUGua-GCUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 20006 | 0.68 | 0.661242 |
Target: 5'- gGCGgcUCGCCgccCGGCGcgcUCGuCGUCGAUg -3' miRNA: 3'- -CGC--AGCGGaa-GCUGU---AGCuGCAGCUA- -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 20211 | 0.68 | 0.672336 |
Target: 5'- cGCGgcucgCGCUUUCGugG-CGGCGaUCGAc -3' miRNA: 3'- -CGCa----GCGGAAGCugUaGCUGC-AGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 20713 | 0.68 | 0.683391 |
Target: 5'- gGCGcagCGCCguugCGACGcUCG-CGUCGAa -3' miRNA: 3'- -CGCa--GCGGaa--GCUGU-AGCuGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 21909 | 0.69 | 0.616697 |
Target: 5'- cGCGUCGCgguaUUCGAUgggAUUGcCGUCGAg -3' miRNA: 3'- -CGCAGCGg---AAGCUG---UAGCuGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 22108 | 0.66 | 0.808778 |
Target: 5'- cUGUcCGCCcgCGugAUCuGCGUCGAg -3' miRNA: 3'- cGCA-GCGGaaGCugUAGcUGCAGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 22172 | 0.66 | 0.779221 |
Target: 5'- uUGUCGCCggCGGCGgccggCGGCGguUCGGc -3' miRNA: 3'- cGCAGCGGaaGCUGUa----GCUGC--AGCUa -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 22579 | 0.69 | 0.638982 |
Target: 5'- cCGUCGUCa-CGACAUCGGCGcUCGu- -3' miRNA: 3'- cGCAGCGGaaGCUGUAGCUGC-AGCua -5' |
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17081 | 5' | -53.4 | NC_004333.2 | + | 24352 | 0.67 | 0.745097 |
Target: 5'- cGCaGUCGCCgggCGACAauuucggguucuuuUCGACGggCGGc -3' miRNA: 3'- -CG-CAGCGGaa-GCUGU--------------AGCUGCa-GCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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