miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17081 5' -53.4 NC_004333.2 + 37269 0.77 0.235583
Target:  5'- cGCGgCGCuCUuuccgaUCGACGUCGAUGUCGAa -3'
miRNA:   3'- -CGCaGCG-GA------AGCUGUAGCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 14963 0.68 0.683391
Target:  5'- uCGUCGCgCgUCGAUGauacCGACGUCGAUc -3'
miRNA:   3'- cGCAGCG-GaAGCUGUa---GCUGCAGCUA- -5'
17081 5' -53.4 NC_004333.2 + 18413 0.69 0.638982
Target:  5'- aGCGcaaCGCCUcgCGAUcggCGGCGUCGAc -3'
miRNA:   3'- -CGCa--GCGGAa-GCUGua-GCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 39541 0.7 0.580081
Target:  5'- uGCGgCGCCgaugUUGACGUCGACuuucgugacgauggGUCGGUu -3'
miRNA:   3'- -CGCaGCGGa---AGCUGUAGCUG--------------CAGCUA- -5'
17081 5' -53.4 NC_004333.2 + 25187 0.71 0.486574
Target:  5'- cGCGucucgaacUCGCUgcgCGAC-UCGACGUCGAc -3'
miRNA:   3'- -CGC--------AGCGGaa-GCUGuAGCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 32619 0.72 0.455958
Target:  5'- cGCGUgCGgCUUCGACGUUGAUGcacUCGGUc -3'
miRNA:   3'- -CGCA-GCgGAAGCUGUAGCUGC---AGCUA- -5'
17081 5' -53.4 NC_004333.2 + 14272 0.66 0.822004
Target:  5'- gGCGgcaCGCCUUCGAgCAUCGggaagugcuucuucaGCauGUCGAUc -3'
miRNA:   3'- -CGCa--GCGGAAGCU-GUAGC---------------UG--CAGCUA- -5'
17081 5' -53.4 NC_004333.2 + 7410 0.66 0.799101
Target:  5'- cGUGUCcuuGCCUUCGACGcgCGGCGcccaGAg -3'
miRNA:   3'- -CGCAG---CGGAAGCUGUa-GCUGCag--CUa -5'
17081 5' -53.4 NC_004333.2 + 5195 0.67 0.748258
Target:  5'- --aUCGCCUgcaGGCG-CGGCGUCGGc -3'
miRNA:   3'- cgcAGCGGAag-CUGUaGCUGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 20211 0.68 0.672336
Target:  5'- cGCGgcucgCGCUUUCGugG-CGGCGaUCGAc -3'
miRNA:   3'- -CGCa----GCGGAAGCugUaGCUGC-AGCUa -5'
17081 5' -53.4 NC_004333.2 + 9327 0.7 0.561386
Target:  5'- uCGUUGUCUUCGGCAcuuucaugcUCGuCGUCGGc -3'
miRNA:   3'- cGCAGCGGAAGCUGU---------AGCuGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 34886 0.74 0.361264
Target:  5'- cCGUUGCCUUCGAUGUUGccguuggccgucaACGUCGAc -3'
miRNA:   3'- cGCAGCGGAAGCUGUAGC-------------UGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 22172 0.66 0.779221
Target:  5'- uUGUCGCCggCGGCGgccggCGGCGguUCGGc -3'
miRNA:   3'- cGCAGCGGaaGCUGUa----GCUGC--AGCUa -5'
17081 5' -53.4 NC_004333.2 + 33006 0.72 0.436135
Target:  5'- gGCGauacCGCUaUCGGgAUCGGCGUCGAUc -3'
miRNA:   3'- -CGCa---GCGGaAGCUgUAGCUGCAGCUA- -5'
17081 5' -53.4 NC_004333.2 + 22579 0.69 0.638982
Target:  5'- cCGUCGUCa-CGACAUCGGCGcUCGu- -3'
miRNA:   3'- cGCAGCGGaaGCUGUAGCUGC-AGCua -5'
17081 5' -53.4 NC_004333.2 + 28042 0.66 0.779221
Target:  5'- cGUGUCGC--UCGugAUCGGCGUa--- -3'
miRNA:   3'- -CGCAGCGgaAGCugUAGCUGCAgcua -5'
17081 5' -53.4 NC_004333.2 + 25345 0.72 0.445985
Target:  5'- cGCGUUGCCggUCGuuGCGUCGuacauuACGUCGGUc -3'
miRNA:   3'- -CGCAGCGGa-AGC--UGUAGC------UGCAGCUA- -5'
17081 5' -53.4 NC_004333.2 + 11433 0.68 0.693298
Target:  5'- aCGUCGCCUUCGACcgcugUGugGUauuccugCGAg -3'
miRNA:   3'- cGCAGCGGAAGCUGua---GCugCA-------GCUa -5'
17081 5' -53.4 NC_004333.2 + 20713 0.68 0.683391
Target:  5'- gGCGcagCGCCguugCGACGcUCG-CGUCGAa -3'
miRNA:   3'- -CGCa--GCGGaa--GCUGU-AGCuGCAGCUa -5'
17081 5' -53.4 NC_004333.2 + 25374 0.67 0.726992
Target:  5'- gGCaGUCGCCggcgUCGGCccgguugCGACGcCGAa -3'
miRNA:   3'- -CG-CAGCGGa---AGCUGua-----GCUGCaGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.