miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 21608 0.66 0.970489
Target:  5'- gGCGAUUCGGACGau-ACgCGUucGACGcGCc -3'
miRNA:   3'- -UGCUAAGCUUGUaguUG-GCA--CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 34024 0.66 0.970489
Target:  5'- cGCGA--CGGGCAUCAcgguGCCGUc-UGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUAGU----UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40708 0.66 0.970489
Target:  5'- cCGAUcgccgCGAuCGUC-ACCGgcGGCGGCa -3'
miRNA:   3'- uGCUAa----GCUuGUAGuUGGCa-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32128 0.66 0.970163
Target:  5'- cGCGAUaagcgccagcacgUCGAACGcggCGACUGUcGGCaGGCc -3'
miRNA:   3'- -UGCUA-------------AGCUUGUa--GUUGGCA-CUG-CCG- -5'
17082 3' -48.9 NC_004333.2 + 42634 0.66 0.967113
Target:  5'- aACGAcgCGGAUAa-GGCCGUgaugcccguuGACGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUagUUGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 44580 0.66 0.967113
Target:  5'- cCGAcgCGAugGUCGG-CGUGugGGa -3'
miRNA:   3'- uGCUaaGCUugUAGUUgGCACugCCg -5'
17082 3' -48.9 NC_004333.2 + 11350 0.66 0.967113
Target:  5'- cGCGGUUCGu-CGUCAccuuGCCGcgcucGACGaGCu -3'
miRNA:   3'- -UGCUAAGCuuGUAGU----UGGCa----CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 24821 0.66 0.967113
Target:  5'- cGCGAccugcacgUUGAaguagACcUCGACCGUcGGCGGCc -3'
miRNA:   3'- -UGCUa-------AGCU-----UGuAGUUGGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 37676 0.66 0.963472
Target:  5'- cCGAccCGcuCGUCGGCCGgcccggcgcgUGGCGGCu -3'
miRNA:   3'- uGCUaaGCuuGUAGUUGGC----------ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 28757 0.66 0.959558
Target:  5'- cGCGAgcgccGCGUCGACCGcgcgggucgcGGCGGCg -3'
miRNA:   3'- -UGCUaagcuUGUAGUUGGCa---------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 41695 0.66 0.959558
Target:  5'- uCGAcgCGGGCggCAACUucgGGCGGCa -3'
miRNA:   3'- uGCUaaGCUUGuaGUUGGca-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 17083 0.66 0.959558
Target:  5'- cACGAgUCGAGCG-CGGC---GACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUGgcaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32416 0.66 0.959558
Target:  5'- cACGcuaUCGGGCAgcgacccggCAGCCGUGcACGcGCu -3'
miRNA:   3'- -UGCua-AGCUUGUa--------GUUGGCAC-UGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 20740 0.66 0.959558
Target:  5'- cGCGcugcCGGACAUC-GCCGacGCGGCu -3'
miRNA:   3'- -UGCuaa-GCUUGUAGuUGGCacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 25527 0.66 0.959152
Target:  5'- gACGAUccCGggUGUCGucguaaccggcacGCCcggcGUGACGGCc -3'
miRNA:   3'- -UGCUAa-GCuuGUAGU-------------UGG----CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 47964 0.66 0.955366
Target:  5'- cUGGUcgUCGGcguCAUCGGCgGUGuGCGGCu -3'
miRNA:   3'- uGCUA--AGCUu--GUAGUUGgCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 23102 0.66 0.955366
Target:  5'- ----aUCGGuuGCGUCGGCUGaacGGCGGCa -3'
miRNA:   3'- ugcuaAGCU--UGUAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 10113 0.66 0.955366
Target:  5'- cGCGAUUCGGAUcgaGGCCcagGuCGGCa -3'
miRNA:   3'- -UGCUAAGCUUGuagUUGGca-CuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 19930 0.66 0.955366
Target:  5'- gACGA--CGAGCGc--GCCG-GGCGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUaguUGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 27589 0.66 0.954493
Target:  5'- uGCGAUcgacacgUCGAucgcuuACAUCAACCGcacgcaaUGgaucGCGGCg -3'
miRNA:   3'- -UGCUA-------AGCU------UGUAGUUGGC-------AC----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.