Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 46129 | 0.7 | 0.830035 |
Target: 5'- uACGGcaagUUCGAGgAUCAcGCCGUGAUcGCa -3' miRNA: 3'- -UGCU----AAGCUUgUAGU-UGGCACUGcCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 42216 | 0.7 | 0.820516 |
Target: 5'- uGCGGcUCG-ACuUCGACCGcacGACGGCc -3' miRNA: 3'- -UGCUaAGCuUGuAGUUGGCa--CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 20996 | 0.7 | 0.820516 |
Target: 5'- uGCGuUUCGAGCGcguggCAGCCGUcACGGg -3' miRNA: 3'- -UGCuAAGCUUGUa----GUUGGCAcUGCCg -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 9888 | 0.7 | 0.826254 |
Target: 5'- gGCGAcgCGGACGggcaggcauacgaCGGCCGgaUGACGGCu -3' miRNA: 3'- -UGCUaaGCUUGUa------------GUUGGC--ACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 32297 | 0.69 | 0.860641 |
Target: 5'- gGCGAUgUCGAcguGCGUCAgcaggucggucacgaGCgCGUGcACGGCu -3' miRNA: 3'- -UGCUA-AGCU---UGUAGU---------------UG-GCAC-UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38440 | 0.69 | 0.865741 |
Target: 5'- cCGcgUCGAACuuuGUCGAuCCGUGGCGcgacGCg -3' miRNA: 3'- uGCuaAGCUUG---UAGUU-GGCACUGC----CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 15088 | 0.69 | 0.88204 |
Target: 5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3' miRNA: 3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 15660 | 0.69 | 0.88204 |
Target: 5'- cCGA--CGAGCAgcgugCGACCGUGAuCGaGCa -3' miRNA: 3'- uGCUaaGCUUGUa----GUUGGCACU-GC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 40449 | 0.69 | 0.865741 |
Target: 5'- -gGGUUCGA--GUCGGCCGc-GCGGCg -3' miRNA: 3'- ugCUAAGCUugUAGUUGGCacUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 5853 | 0.69 | 0.88204 |
Target: 5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3' miRNA: 3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 23520 | 0.69 | 0.889774 |
Target: 5'- uGCGGUcaacccCGAuACGUCGACCGauccggccGGCGGCg -3' miRNA: 3'- -UGCUAa-----GCU-UGUAGUUGGCa-------CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38644 | 0.69 | 0.889774 |
Target: 5'- cACGAUgcccgCGAACAgcagcugugUCGuuGCCGUgagcgcgucgGACGGCa -3' miRNA: 3'- -UGCUAa----GCUUGU---------AGU--UGGCA----------CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 24920 | 0.68 | 0.897222 |
Target: 5'- uGCGGUUCGug---CGGCCGccGACGGUc -3' miRNA: 3'- -UGCUAAGCuuguaGUUGGCa-CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 5589 | 0.68 | 0.897222 |
Target: 5'- uGCGGccaUCGGGCAugcgcacguUCAgGCCGUG-CGGCa -3' miRNA: 3'- -UGCUa--AGCUUGU---------AGU-UGGCACuGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 34812 | 0.68 | 0.897222 |
Target: 5'- cGCGGgcggCGucACGUCAACUaagGGCGGCa -3' miRNA: 3'- -UGCUaa--GCu-UGUAGUUGGca-CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 43487 | 0.68 | 0.924069 |
Target: 5'- cCGAccCGAGCGUCuGCCugcgcgGGCGGCu -3' miRNA: 3'- uGCUaaGCUUGUAGuUGGca----CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38059 | 0.68 | 0.926491 |
Target: 5'- aGCGAcgCGGGCAgugcuuggagaauguUCGccACCGUGacGCGGCc -3' miRNA: 3'- -UGCUaaGCUUGU---------------AGU--UGGCAC--UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8762 | 0.68 | 0.924069 |
Target: 5'- cACGG-UCGGcACGUUcGCCGUgcugaacgccGACGGCa -3' miRNA: 3'- -UGCUaAGCU-UGUAGuUGGCA----------CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 24811 | 0.68 | 0.917805 |
Target: 5'- cGCGuucgUGAGCGgcuucUCGACCGaUGACGGg -3' miRNA: 3'- -UGCuaa-GCUUGU-----AGUUGGC-ACUGCCg -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 40315 | 0.68 | 0.904379 |
Target: 5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3' miRNA: 3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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