miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 37660 1.13 0.002589
Target:  5'- gACGAUUCGAACAUCAACCGUGACGGCu -3'
miRNA:   3'- -UGCUAAGCUUGUAGUUGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 19382 0.76 0.522461
Target:  5'- -aGGUUCGAGCuUCuuuCCGUaGACGGCc -3'
miRNA:   3'- ugCUAAGCUUGuAGuu-GGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 30365 0.75 0.57854
Target:  5'- cGCGGUUCGGAuCGUCGACCGcGAUGcCg -3'
miRNA:   3'- -UGCUAAGCUU-GUAGUUGGCaCUGCcG- -5'
17082 3' -48.9 NC_004333.2 + 15533 0.74 0.647291
Target:  5'- cGCGAUguuagCGGGCAUCGagcagccccAUCGUGGCGaGCu -3'
miRNA:   3'- -UGCUAa----GCUUGUAGU---------UGGCACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 10035 0.73 0.658761
Target:  5'- gGCGGUUCGGuacACAaCGugCGguucGACGGCa -3'
miRNA:   3'- -UGCUAAGCU---UGUaGUugGCa---CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38286 0.72 0.715464
Target:  5'- gACGAgaUCGAuGCAcgcgCGACCGUGcacGCGGCg -3'
miRNA:   3'- -UGCUa-AGCU-UGUa---GUUGGCAC---UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 28220 0.72 0.748511
Target:  5'- uGCGcgUcCGGgcGCGUCAcggugACCGUGACGcGCg -3'
miRNA:   3'- -UGCuaA-GCU--UGUAGU-----UGGCACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 8694 0.72 0.748511
Target:  5'- cACGg--CGAACGUgcCGACCGUGACGccGCu -3'
miRNA:   3'- -UGCuaaGCUUGUA--GUUGGCACUGC--CG- -5'
17082 3' -48.9 NC_004333.2 + 32080 0.71 0.76992
Target:  5'- gACGAUcgcauagaUCG-GCGUCGGCgcguucaGUGACGGCa -3'
miRNA:   3'- -UGCUA--------AGCuUGUAGUUGg------CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8967 0.71 0.780399
Target:  5'- cGCGGgcUGGAuCGUgGGCCGUGcGCGGCg -3'
miRNA:   3'- -UGCUaaGCUU-GUAgUUGGCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 6671 0.71 0.780399
Target:  5'- uGCGGcgcUGGGCggCGcGCCGUGGCGGCg -3'
miRNA:   3'- -UGCUaa-GCUUGuaGU-UGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 31766 0.71 0.780399
Target:  5'- uCGcgUCGAGCGUCGACgGUcuauccaacACGGCg -3'
miRNA:   3'- uGCuaAGCUUGUAGUUGgCAc--------UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 33441 0.71 0.790711
Target:  5'- cGCGA-UCGGGCAgCAGgCGUuccacGACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUgGCA-----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 30170 0.71 0.800842
Target:  5'- cGCGggUCGcGCAUCGACgCGUuccGuCGGCg -3'
miRNA:   3'- -UGCuaAGCuUGUAGUUG-GCA---CuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 2841 0.71 0.800842
Target:  5'- cACGGUcgugaCGAACG-CGACCGgcacGGCGGCc -3'
miRNA:   3'- -UGCUAa----GCUUGUaGUUGGCa---CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 21183 0.7 0.810781
Target:  5'- gGCGcucgCGAACAUCAGaCC--GACGGCg -3'
miRNA:   3'- -UGCuaa-GCUUGUAGUU-GGcaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 25918 0.7 0.820516
Target:  5'- -aGAUUC--GCAUCGACCGccUGACGcGCc -3'
miRNA:   3'- ugCUAAGcuUGUAGUUGGC--ACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 42216 0.7 0.820516
Target:  5'- uGCGGcUCG-ACuUCGACCGcacGACGGCc -3'
miRNA:   3'- -UGCUaAGCuUGuAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20996 0.7 0.820516
Target:  5'- uGCGuUUCGAGCGcguggCAGCCGUcACGGg -3'
miRNA:   3'- -UGCuAAGCUUGUa----GUUGGCAcUGCCg -5'
17082 3' -48.9 NC_004333.2 + 38484 0.7 0.820516
Target:  5'- aGCGucUCGAucgcCGUCuuGACCGUGGcCGGCg -3'
miRNA:   3'- -UGCuaAGCUu---GUAG--UUGGCACU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.