miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 9888 0.7 0.826254
Target:  5'- gGCGAcgCGGACGggcaggcauacgaCGGCCGgaUGACGGCu -3'
miRNA:   3'- -UGCUaaGCUUGUa------------GUUGGC--ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 2079 0.7 0.830035
Target:  5'- gUGAcgUCGGGCAUCAuCCGcGcCGGCg -3'
miRNA:   3'- uGCUa-AGCUUGUAGUuGGCaCuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 46129 0.7 0.830035
Target:  5'- uACGGcaagUUCGAGgAUCAcGCCGUGAUcGCa -3'
miRNA:   3'- -UGCU----AAGCUUgUAGU-UGGCACUGcCG- -5'
17082 3' -48.9 NC_004333.2 + 21090 0.7 0.839327
Target:  5'- cGCGGccacuuCGUCGcCCGUGACGGCu -3'
miRNA:   3'- -UGCUaagcuuGUAGUuGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32297 0.69 0.860641
Target:  5'- gGCGAUgUCGAcguGCGUCAgcaggucggucacgaGCgCGUGcACGGCu -3'
miRNA:   3'- -UGCUA-AGCU---UGUAGU---------------UG-GCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38440 0.69 0.865741
Target:  5'- cCGcgUCGAACuuuGUCGAuCCGUGGCGcgacGCg -3'
miRNA:   3'- uGCuaAGCUUG---UAGUU-GGCACUGC----CG- -5'
17082 3' -48.9 NC_004333.2 + 40449 0.69 0.865741
Target:  5'- -gGGUUCGA--GUCGGCCGc-GCGGCg -3'
miRNA:   3'- ugCUAAGCUugUAGUUGGCacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 5853 0.69 0.88204
Target:  5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3'
miRNA:   3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5'
17082 3' -48.9 NC_004333.2 + 15088 0.69 0.88204
Target:  5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3'
miRNA:   3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15660 0.69 0.88204
Target:  5'- cCGA--CGAGCAgcgugCGACCGUGAuCGaGCa -3'
miRNA:   3'- uGCUaaGCUUGUa----GUUGGCACU-GC-CG- -5'
17082 3' -48.9 NC_004333.2 + 23520 0.69 0.889774
Target:  5'- uGCGGUcaacccCGAuACGUCGACCGauccggccGGCGGCg -3'
miRNA:   3'- -UGCUAa-----GCU-UGUAGUUGGCa-------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38644 0.69 0.889774
Target:  5'- cACGAUgcccgCGAACAgcagcugugUCGuuGCCGUgagcgcgucgGACGGCa -3'
miRNA:   3'- -UGCUAa----GCUUGU---------AGU--UGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24920 0.68 0.897222
Target:  5'- uGCGGUUCGug---CGGCCGccGACGGUc -3'
miRNA:   3'- -UGCUAAGCuuguaGUUGGCa-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 34812 0.68 0.897222
Target:  5'- cGCGGgcggCGucACGUCAACUaagGGCGGCa -3'
miRNA:   3'- -UGCUaa--GCu-UGUAGUUGGca-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 5589 0.68 0.897222
Target:  5'- uGCGGccaUCGGGCAugcgcacguUCAgGCCGUG-CGGCa -3'
miRNA:   3'- -UGCUa--AGCUUGU---------AGU-UGGCACuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11053 0.68 0.897222
Target:  5'- cCGggUCGAAUucUCGACCGccgGGCGuGCg -3'
miRNA:   3'- uGCuaAGCUUGu-AGUUGGCa--CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 15615 0.68 0.897222
Target:  5'- cACGGUUucggCGAACGUCGuGCCGU--UGGCg -3'
miRNA:   3'- -UGCUAA----GCUUGUAGU-UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11811 0.68 0.904379
Target:  5'- uACGAcgCGGcCAUCAG-CGcGACGGCg -3'
miRNA:   3'- -UGCUaaGCUuGUAGUUgGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8635 0.68 0.904379
Target:  5'- cGCGAcgUCGAGCucggcgCGGCgcccggcuugcuCGUGACGGUg -3'
miRNA:   3'- -UGCUa-AGCUUGua----GUUG------------GCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40315 0.68 0.904379
Target:  5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3'
miRNA:   3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.