miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 15258 0.67 0.950888
Target:  5'- cGCGAaaUGAGCGaCGauuuGCCGUGcuGCGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUaGU----UGGCAC--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 39653 0.67 0.950888
Target:  5'- -gGAcgCGAACuUCAcggucGCCGaGGCGGCg -3'
miRNA:   3'- ugCUaaGCUUGuAGU-----UGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11974 0.67 0.941056
Target:  5'- cGCGcgUCGAcgAUcgCGGCCGUaucGCGGUg -3'
miRNA:   3'- -UGCuaAGCU--UGuaGUUGGCAc--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 17599 0.67 0.935694
Target:  5'- cGCGAUcgcuUCGGACAgugCGACCGgcuGCaGCa -3'
miRNA:   3'- -UGCUA----AGCUUGUa--GUUGGCac-UGcCG- -5'
17082 3' -48.9 NC_004333.2 + 32059 0.67 0.935694
Target:  5'- cGCGcuaUCGGACuaucCGACCGagcagGGCGGCu -3'
miRNA:   3'- -UGCua-AGCUUGua--GUUGGCa----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15871 0.67 0.935694
Target:  5'- uGCGAgcccgCGAGCGagCcGCCGUGACcGCc -3'
miRNA:   3'- -UGCUaa---GCUUGUa-GuUGGCACUGcCG- -5'
17082 3' -48.9 NC_004333.2 + 10700 0.67 0.930032
Target:  5'- uCGGUUCGAcGCuguUCGACgCGauUGACGGUc -3'
miRNA:   3'- uGCUAAGCU-UGu--AGUUG-GC--ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 31688 0.67 0.930032
Target:  5'- cGCGcg-CGGccACAgCGGCCGaGACGGCg -3'
miRNA:   3'- -UGCuaaGCU--UGUaGUUGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20573 0.67 0.928275
Target:  5'- gGCGcgUCGggUcgC-GCCGUGguguuucugcaggcGCGGCu -3'
miRNA:   3'- -UGCuaAGCuuGuaGuUGGCAC--------------UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38059 0.68 0.926491
Target:  5'- aGCGAcgCGGGCAgugcuuggagaauguUCGccACCGUGacGCGGCc -3'
miRNA:   3'- -UGCUaaGCUUGU---------------AGU--UGGCAC--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8762 0.68 0.924069
Target:  5'- cACGG-UCGGcACGUUcGCCGUgcugaacgccGACGGCa -3'
miRNA:   3'- -UGCUaAGCU-UGUAGuUGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 43487 0.68 0.924069
Target:  5'- cCGAccCGAGCGUCuGCCugcgcgGGCGGCu -3'
miRNA:   3'- uGCUaaGCUUGUAGuUGGca----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 44637 0.68 0.924069
Target:  5'- cCGAgUUCGAaauggacaugcGCAUCAACCaucGCGGCa -3'
miRNA:   3'- uGCU-AAGCU-----------UGUAGUUGGcacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 22048 0.68 0.917805
Target:  5'- cGCGgg-CGGACA--GAUCGUGcACGGCg -3'
miRNA:   3'- -UGCuaaGCUUGUagUUGGCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24811 0.68 0.917805
Target:  5'- cGCGuucgUGAGCGgcuucUCGACCGaUGACGGg -3'
miRNA:   3'- -UGCuaa-GCUUGU-----AGUUGGC-ACUGCCg -5'
17082 3' -48.9 NC_004333.2 + 11811 0.68 0.904379
Target:  5'- uACGAcgCGGcCAUCAG-CGcGACGGCg -3'
miRNA:   3'- -UGCUaaGCUuGUAGUUgGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8635 0.68 0.904379
Target:  5'- cGCGAcgUCGAGCucggcgCGGCgcccggcuugcuCGUGACGGUg -3'
miRNA:   3'- -UGCUa-AGCUUGua----GUUG------------GCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40315 0.68 0.904379
Target:  5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3'
miRNA:   3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5'
17082 3' -48.9 NC_004333.2 + 15615 0.68 0.897222
Target:  5'- cACGGUUucggCGAACGUCGuGCCGU--UGGCg -3'
miRNA:   3'- -UGCUAA----GCUUGUAGU-UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24920 0.68 0.897222
Target:  5'- uGCGGUUCGug---CGGCCGccGACGGUc -3'
miRNA:   3'- -UGCUAAGCuuguaGUUGGCa-CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.