Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 2841 | 0.71 | 0.800842 |
Target: 5'- cACGGUcgugaCGAACG-CGACCGgcacGGCGGCc -3' miRNA: 3'- -UGCUAa----GCUUGUaGUUGGCa---CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 30170 | 0.71 | 0.800842 |
Target: 5'- cGCGggUCGcGCAUCGACgCGUuccGuCGGCg -3' miRNA: 3'- -UGCuaAGCuUGUAGUUG-GCA---CuGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 33441 | 0.71 | 0.790711 |
Target: 5'- cGCGA-UCGGGCAgCAGgCGUuccacGACGGCg -3' miRNA: 3'- -UGCUaAGCUUGUaGUUgGCA-----CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 6671 | 0.71 | 0.780399 |
Target: 5'- uGCGGcgcUGGGCggCGcGCCGUGGCGGCg -3' miRNA: 3'- -UGCUaa-GCUUGuaGU-UGGCACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 31766 | 0.71 | 0.780399 |
Target: 5'- uCGcgUCGAGCGUCGACgGUcuauccaacACGGCg -3' miRNA: 3'- uGCuaAGCUUGUAGUUGgCAc--------UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8967 | 0.71 | 0.780399 |
Target: 5'- cGCGGgcUGGAuCGUgGGCCGUGcGCGGCg -3' miRNA: 3'- -UGCUaaGCUU-GUAgUUGGCAC-UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 32080 | 0.71 | 0.76992 |
Target: 5'- gACGAUcgcauagaUCG-GCGUCGGCgcguucaGUGACGGCa -3' miRNA: 3'- -UGCUA--------AGCuUGUAGUUGg------CACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 28220 | 0.72 | 0.748511 |
Target: 5'- uGCGcgUcCGGgcGCGUCAcggugACCGUGACGcGCg -3' miRNA: 3'- -UGCuaA-GCU--UGUAGU-----UGGCACUGC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8694 | 0.72 | 0.748511 |
Target: 5'- cACGg--CGAACGUgcCGACCGUGACGccGCu -3' miRNA: 3'- -UGCuaaGCUUGUA--GUUGGCACUGC--CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38286 | 0.72 | 0.715464 |
Target: 5'- gACGAgaUCGAuGCAcgcgCGACCGUGcacGCGGCg -3' miRNA: 3'- -UGCUa-AGCU-UGUa---GUUGGCAC---UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 10035 | 0.73 | 0.658761 |
Target: 5'- gGCGGUUCGGuacACAaCGugCGguucGACGGCa -3' miRNA: 3'- -UGCUAAGCU---UGUaGUugGCa---CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 15533 | 0.74 | 0.647291 |
Target: 5'- cGCGAUguuagCGGGCAUCGagcagccccAUCGUGGCGaGCu -3' miRNA: 3'- -UGCUAa----GCUUGUAGU---------UGGCACUGC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 30365 | 0.75 | 0.57854 |
Target: 5'- cGCGGUUCGGAuCGUCGACCGcGAUGcCg -3' miRNA: 3'- -UGCUAAGCUU-GUAGUUGGCaCUGCcG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 19382 | 0.76 | 0.522461 |
Target: 5'- -aGGUUCGAGCuUCuuuCCGUaGACGGCc -3' miRNA: 3'- ugCUAAGCUUGuAGuu-GGCA-CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 37660 | 1.13 | 0.002589 |
Target: 5'- gACGAUUCGAACAUCAACCGUGACGGCu -3' miRNA: 3'- -UGCUAAGCUUGUAGUUGGCACUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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