miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 2079 0.7 0.830035
Target:  5'- gUGAcgUCGGGCAUCAuCCGcGcCGGCg -3'
miRNA:   3'- uGCUa-AGCUUGUAGUuGGCaCuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 2841 0.71 0.800842
Target:  5'- cACGGUcgugaCGAACG-CGACCGgcacGGCGGCc -3'
miRNA:   3'- -UGCUAa----GCUUGUaGUUGGCa---CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 5589 0.68 0.897222
Target:  5'- uGCGGccaUCGGGCAugcgcacguUCAgGCCGUG-CGGCa -3'
miRNA:   3'- -UGCUa--AGCUUGU---------AGU-UGGCACuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 5853 0.69 0.88204
Target:  5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3'
miRNA:   3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5'
17082 3' -48.9 NC_004333.2 + 6671 0.71 0.780399
Target:  5'- uGCGGcgcUGGGCggCGcGCCGUGGCGGCg -3'
miRNA:   3'- -UGCUaa-GCUUGuaGU-UGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8635 0.68 0.904379
Target:  5'- cGCGAcgUCGAGCucggcgCGGCgcccggcuugcuCGUGACGGUg -3'
miRNA:   3'- -UGCUa-AGCUUGua----GUUG------------GCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8694 0.72 0.748511
Target:  5'- cACGg--CGAACGUgcCGACCGUGACGccGCu -3'
miRNA:   3'- -UGCuaaGCUUGUA--GUUGGCACUGC--CG- -5'
17082 3' -48.9 NC_004333.2 + 8762 0.68 0.924069
Target:  5'- cACGG-UCGGcACGUUcGCCGUgcugaacgccGACGGCa -3'
miRNA:   3'- -UGCUaAGCU-UGUAGuUGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8967 0.71 0.780399
Target:  5'- cGCGGgcUGGAuCGUgGGCCGUGcGCGGCg -3'
miRNA:   3'- -UGCUaaGCUU-GUAgUUGGCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 9888 0.7 0.826254
Target:  5'- gGCGAcgCGGACGggcaggcauacgaCGGCCGgaUGACGGCu -3'
miRNA:   3'- -UGCUaaGCUUGUa------------GUUGGC--ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 10035 0.73 0.658761
Target:  5'- gGCGGUUCGGuacACAaCGugCGguucGACGGCa -3'
miRNA:   3'- -UGCUAAGCU---UGUaGUugGCa---CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 10113 0.66 0.955366
Target:  5'- cGCGAUUCGGAUcgaGGCCcagGuCGGCa -3'
miRNA:   3'- -UGCUAAGCUUGuagUUGGca-CuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 10700 0.67 0.930032
Target:  5'- uCGGUUCGAcGCuguUCGACgCGauUGACGGUc -3'
miRNA:   3'- uGCUAAGCU-UGu--AGUUG-GC--ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11053 0.68 0.897222
Target:  5'- cCGggUCGAAUucUCGACCGccgGGCGuGCg -3'
miRNA:   3'- uGCuaAGCUUGu-AGUUGGCa--CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 11350 0.66 0.967113
Target:  5'- cGCGGUUCGu-CGUCAccuuGCCGcgcucGACGaGCu -3'
miRNA:   3'- -UGCUAAGCuuGUAGU----UGGCa----CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 11811 0.68 0.904379
Target:  5'- uACGAcgCGGcCAUCAG-CGcGACGGCg -3'
miRNA:   3'- -UGCUaaGCUuGUAGUUgGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11974 0.67 0.941056
Target:  5'- cGCGcgUCGAcgAUcgCGGCCGUaucGCGGUg -3'
miRNA:   3'- -UGCuaAGCU--UGuaGUUGGCAc--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15088 0.69 0.88204
Target:  5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3'
miRNA:   3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15258 0.67 0.950888
Target:  5'- cGCGAaaUGAGCGaCGauuuGCCGUGcuGCGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUaGU----UGGCAC--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15533 0.74 0.647291
Target:  5'- cGCGAUguuagCGGGCAUCGagcagccccAUCGUGGCGaGCu -3'
miRNA:   3'- -UGCUAa----GCUUGUAGU---------UGGCACUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.