miRNA display CGI


Results 61 - 75 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 38440 0.69 0.865741
Target:  5'- cCGcgUCGAACuuuGUCGAuCCGUGGCGcgacGCg -3'
miRNA:   3'- uGCuaAGCUUG---UAGUU-GGCACUGC----CG- -5'
17082 3' -48.9 NC_004333.2 + 38484 0.7 0.820516
Target:  5'- aGCGucUCGAucgcCGUCuuGACCGUGGcCGGCg -3'
miRNA:   3'- -UGCuaAGCUu---GUAG--UUGGCACU-GCCG- -5'
17082 3' -48.9 NC_004333.2 + 38644 0.69 0.889774
Target:  5'- cACGAUgcccgCGAACAgcagcugugUCGuuGCCGUgagcgcgucgGACGGCa -3'
miRNA:   3'- -UGCUAa----GCUUGU---------AGU--UGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 39653 0.67 0.950888
Target:  5'- -gGAcgCGAACuUCAcggucGCCGaGGCGGCg -3'
miRNA:   3'- ugCUaaGCUUGuAGU-----UGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40315 0.68 0.904379
Target:  5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3'
miRNA:   3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5'
17082 3' -48.9 NC_004333.2 + 40449 0.69 0.865741
Target:  5'- -gGGUUCGA--GUCGGCCGc-GCGGCg -3'
miRNA:   3'- ugCUAAGCUugUAGUUGGCacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40708 0.66 0.970489
Target:  5'- cCGAUcgccgCGAuCGUC-ACCGgcGGCGGCa -3'
miRNA:   3'- uGCUAa----GCUuGUAGuUGGCa-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 41695 0.66 0.959558
Target:  5'- uCGAcgCGGGCggCAACUucgGGCGGCa -3'
miRNA:   3'- uGCUaaGCUUGuaGUUGGca-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 42216 0.7 0.820516
Target:  5'- uGCGGcUCG-ACuUCGACCGcacGACGGCc -3'
miRNA:   3'- -UGCUaAGCuUGuAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 42634 0.66 0.967113
Target:  5'- aACGAcgCGGAUAa-GGCCGUgaugcccguuGACGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUagUUGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 43487 0.68 0.924069
Target:  5'- cCGAccCGAGCGUCuGCCugcgcgGGCGGCu -3'
miRNA:   3'- uGCUaaGCUUGUAGuUGGca----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 44580 0.66 0.967113
Target:  5'- cCGAcgCGAugGUCGG-CGUGugGGa -3'
miRNA:   3'- uGCUaaGCUugUAGUUgGCACugCCg -5'
17082 3' -48.9 NC_004333.2 + 44637 0.68 0.924069
Target:  5'- cCGAgUUCGAaauggacaugcGCAUCAACCaucGCGGCa -3'
miRNA:   3'- uGCU-AAGCU-----------UGUAGUUGGcacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 46129 0.7 0.830035
Target:  5'- uACGGcaagUUCGAGgAUCAcGCCGUGAUcGCa -3'
miRNA:   3'- -UGCU----AAGCUUgUAGU-UGGCACUGcCG- -5'
17082 3' -48.9 NC_004333.2 + 47964 0.66 0.955366
Target:  5'- cUGGUcgUCGGcguCAUCGGCgGUGuGCGGCu -3'
miRNA:   3'- uGCUA--AGCUu--GUAGUUGgCAC-UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.