miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 34024 0.66 0.970489
Target:  5'- cGCGA--CGGGCAUCAcgguGCCGUc-UGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUAGU----UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 33441 0.71 0.790711
Target:  5'- cGCGA-UCGGGCAgCAGgCGUuccacGACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUgGCA-----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32416 0.66 0.959558
Target:  5'- cACGcuaUCGGGCAgcgacccggCAGCCGUGcACGcGCu -3'
miRNA:   3'- -UGCua-AGCUUGUa--------GUUGGCAC-UGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 32297 0.69 0.860641
Target:  5'- gGCGAUgUCGAcguGCGUCAgcaggucggucacgaGCgCGUGcACGGCu -3'
miRNA:   3'- -UGCUA-AGCU---UGUAGU---------------UG-GCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32128 0.66 0.970163
Target:  5'- cGCGAUaagcgccagcacgUCGAACGcggCGACUGUcGGCaGGCc -3'
miRNA:   3'- -UGCUA-------------AGCUUGUa--GUUGGCA-CUG-CCG- -5'
17082 3' -48.9 NC_004333.2 + 32080 0.71 0.76992
Target:  5'- gACGAUcgcauagaUCG-GCGUCGGCgcguucaGUGACGGCa -3'
miRNA:   3'- -UGCUA--------AGCuUGUAGUUGg------CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32059 0.67 0.935694
Target:  5'- cGCGcuaUCGGACuaucCGACCGagcagGGCGGCu -3'
miRNA:   3'- -UGCua-AGCUUGua--GUUGGCa----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 31766 0.71 0.780399
Target:  5'- uCGcgUCGAGCGUCGACgGUcuauccaacACGGCg -3'
miRNA:   3'- uGCuaAGCUUGUAGUUGgCAc--------UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 31688 0.67 0.930032
Target:  5'- cGCGcg-CGGccACAgCGGCCGaGACGGCg -3'
miRNA:   3'- -UGCuaaGCU--UGUaGUUGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 30365 0.75 0.57854
Target:  5'- cGCGGUUCGGAuCGUCGACCGcGAUGcCg -3'
miRNA:   3'- -UGCUAAGCUU-GUAGUUGGCaCUGCcG- -5'
17082 3' -48.9 NC_004333.2 + 30170 0.71 0.800842
Target:  5'- cGCGggUCGcGCAUCGACgCGUuccGuCGGCg -3'
miRNA:   3'- -UGCuaAGCuUGUAGUUG-GCA---CuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 28757 0.66 0.959558
Target:  5'- cGCGAgcgccGCGUCGACCGcgcgggucgcGGCGGCg -3'
miRNA:   3'- -UGCUaagcuUGUAGUUGGCa---------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 28220 0.72 0.748511
Target:  5'- uGCGcgUcCGGgcGCGUCAcggugACCGUGACGcGCg -3'
miRNA:   3'- -UGCuaA-GCU--UGUAGU-----UGGCACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 27589 0.66 0.954493
Target:  5'- uGCGAUcgacacgUCGAucgcuuACAUCAACCGcacgcaaUGgaucGCGGCg -3'
miRNA:   3'- -UGCUA-------AGCU------UGUAGUUGGC-------AC----UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 25918 0.7 0.820516
Target:  5'- -aGAUUC--GCAUCGACCGccUGACGcGCc -3'
miRNA:   3'- ugCUAAGcuUGUAGUUGGC--ACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 25527 0.66 0.959152
Target:  5'- gACGAUccCGggUGUCGucguaaccggcacGCCcggcGUGACGGCc -3'
miRNA:   3'- -UGCUAa-GCuuGUAGU-------------UGG----CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24920 0.68 0.897222
Target:  5'- uGCGGUUCGug---CGGCCGccGACGGUc -3'
miRNA:   3'- -UGCUAAGCuuguaGUUGGCa-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24821 0.66 0.967113
Target:  5'- cGCGAccugcacgUUGAaguagACcUCGACCGUcGGCGGCc -3'
miRNA:   3'- -UGCUa-------AGCU-----UGuAGUUGGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24811 0.68 0.917805
Target:  5'- cGCGuucgUGAGCGgcuucUCGACCGaUGACGGg -3'
miRNA:   3'- -UGCuaa-GCUUGU-----AGUUGGC-ACUGCCg -5'
17082 3' -48.9 NC_004333.2 + 23520 0.69 0.889774
Target:  5'- uGCGGUcaacccCGAuACGUCGACCGauccggccGGCGGCg -3'
miRNA:   3'- -UGCUAa-----GCU-UGUAGUUGGCa-------CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.