miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 23102 0.66 0.955366
Target:  5'- ----aUCGGuuGCGUCGGCUGaacGGCGGCa -3'
miRNA:   3'- ugcuaAGCU--UGUAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 22048 0.68 0.917805
Target:  5'- cGCGgg-CGGACA--GAUCGUGcACGGCg -3'
miRNA:   3'- -UGCuaaGCUUGUagUUGGCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 21608 0.66 0.970489
Target:  5'- gGCGAUUCGGACGau-ACgCGUucGACGcGCc -3'
miRNA:   3'- -UGCUAAGCUUGUaguUG-GCA--CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 21183 0.7 0.810781
Target:  5'- gGCGcucgCGAACAUCAGaCC--GACGGCg -3'
miRNA:   3'- -UGCuaa-GCUUGUAGUU-GGcaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 21090 0.7 0.839327
Target:  5'- cGCGGccacuuCGUCGcCCGUGACGGCu -3'
miRNA:   3'- -UGCUaagcuuGUAGUuGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20996 0.7 0.820516
Target:  5'- uGCGuUUCGAGCGcguggCAGCCGUcACGGg -3'
miRNA:   3'- -UGCuAAGCUUGUa----GUUGGCAcUGCCg -5'
17082 3' -48.9 NC_004333.2 + 20740 0.66 0.959558
Target:  5'- cGCGcugcCGGACAUC-GCCGacGCGGCu -3'
miRNA:   3'- -UGCuaa-GCUUGUAGuUGGCacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20573 0.67 0.928275
Target:  5'- gGCGcgUCGggUcgC-GCCGUGguguuucugcaggcGCGGCu -3'
miRNA:   3'- -UGCuaAGCuuGuaGuUGGCAC--------------UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 19930 0.66 0.955366
Target:  5'- gACGA--CGAGCGc--GCCG-GGCGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUaguUGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 19382 0.76 0.522461
Target:  5'- -aGGUUCGAGCuUCuuuCCGUaGACGGCc -3'
miRNA:   3'- ugCUAAGCUUGuAGuu-GGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 17599 0.67 0.935694
Target:  5'- cGCGAUcgcuUCGGACAgugCGACCGgcuGCaGCa -3'
miRNA:   3'- -UGCUA----AGCUUGUa--GUUGGCac-UGcCG- -5'
17082 3' -48.9 NC_004333.2 + 17083 0.66 0.959558
Target:  5'- cACGAgUCGAGCG-CGGC---GACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUGgcaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15871 0.67 0.935694
Target:  5'- uGCGAgcccgCGAGCGagCcGCCGUGACcGCc -3'
miRNA:   3'- -UGCUaa---GCUUGUa-GuUGGCACUGcCG- -5'
17082 3' -48.9 NC_004333.2 + 15660 0.69 0.88204
Target:  5'- cCGA--CGAGCAgcgugCGACCGUGAuCGaGCa -3'
miRNA:   3'- uGCUaaGCUUGUa----GUUGGCACU-GC-CG- -5'
17082 3' -48.9 NC_004333.2 + 15615 0.68 0.897222
Target:  5'- cACGGUUucggCGAACGUCGuGCCGU--UGGCg -3'
miRNA:   3'- -UGCUAA----GCUUGUAGU-UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15533 0.74 0.647291
Target:  5'- cGCGAUguuagCGGGCAUCGagcagccccAUCGUGGCGaGCu -3'
miRNA:   3'- -UGCUAa----GCUUGUAGU---------UGGCACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 15258 0.67 0.950888
Target:  5'- cGCGAaaUGAGCGaCGauuuGCCGUGcuGCGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUaGU----UGGCAC--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15088 0.69 0.88204
Target:  5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3'
miRNA:   3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11974 0.67 0.941056
Target:  5'- cGCGcgUCGAcgAUcgCGGCCGUaucGCGGUg -3'
miRNA:   3'- -UGCuaAGCU--UGuaGUUGGCAc--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11811 0.68 0.904379
Target:  5'- uACGAcgCGGcCAUCAG-CGcGACGGCg -3'
miRNA:   3'- -UGCUaaGCUuGUAGUUgGCaCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.