Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 11350 | 0.66 | 0.967113 |
Target: 5'- cGCGGUUCGu-CGUCAccuuGCCGcgcucGACGaGCu -3' miRNA: 3'- -UGCUAAGCuuGUAGU----UGGCa----CUGC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 11053 | 0.68 | 0.897222 |
Target: 5'- cCGggUCGAAUucUCGACCGccgGGCGuGCg -3' miRNA: 3'- uGCuaAGCUUGu-AGUUGGCa--CUGC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 10700 | 0.67 | 0.930032 |
Target: 5'- uCGGUUCGAcGCuguUCGACgCGauUGACGGUc -3' miRNA: 3'- uGCUAAGCU-UGu--AGUUG-GC--ACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 10113 | 0.66 | 0.955366 |
Target: 5'- cGCGAUUCGGAUcgaGGCCcagGuCGGCa -3' miRNA: 3'- -UGCUAAGCUUGuagUUGGca-CuGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 10035 | 0.73 | 0.658761 |
Target: 5'- gGCGGUUCGGuacACAaCGugCGguucGACGGCa -3' miRNA: 3'- -UGCUAAGCU---UGUaGUugGCa---CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 9888 | 0.7 | 0.826254 |
Target: 5'- gGCGAcgCGGACGggcaggcauacgaCGGCCGgaUGACGGCu -3' miRNA: 3'- -UGCUaaGCUUGUa------------GUUGGC--ACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8967 | 0.71 | 0.780399 |
Target: 5'- cGCGGgcUGGAuCGUgGGCCGUGcGCGGCg -3' miRNA: 3'- -UGCUaaGCUU-GUAgUUGGCAC-UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8762 | 0.68 | 0.924069 |
Target: 5'- cACGG-UCGGcACGUUcGCCGUgcugaacgccGACGGCa -3' miRNA: 3'- -UGCUaAGCU-UGUAGuUGGCA----------CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8694 | 0.72 | 0.748511 |
Target: 5'- cACGg--CGAACGUgcCGACCGUGACGccGCu -3' miRNA: 3'- -UGCuaaGCUUGUA--GUUGGCACUGC--CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 8635 | 0.68 | 0.904379 |
Target: 5'- cGCGAcgUCGAGCucggcgCGGCgcccggcuugcuCGUGACGGUg -3' miRNA: 3'- -UGCUa-AGCUUGua----GUUG------------GCACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 6671 | 0.71 | 0.780399 |
Target: 5'- uGCGGcgcUGGGCggCGcGCCGUGGCGGCg -3' miRNA: 3'- -UGCUaa-GCUUGuaGU-UGGCACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 5853 | 0.69 | 0.88204 |
Target: 5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3' miRNA: 3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 5589 | 0.68 | 0.897222 |
Target: 5'- uGCGGccaUCGGGCAugcgcacguUCAgGCCGUG-CGGCa -3' miRNA: 3'- -UGCUa--AGCUUGU---------AGU-UGGCACuGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 2841 | 0.71 | 0.800842 |
Target: 5'- cACGGUcgugaCGAACG-CGACCGgcacGGCGGCc -3' miRNA: 3'- -UGCUAa----GCUUGUaGUUGGCa---CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 2079 | 0.7 | 0.830035 |
Target: 5'- gUGAcgUCGGGCAUCAuCCGcGcCGGCg -3' miRNA: 3'- uGCUa-AGCUUGUAGUuGGCaCuGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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