miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 30365 0.75 0.57854
Target:  5'- cGCGGUUCGGAuCGUCGACCGcGAUGcCg -3'
miRNA:   3'- -UGCUAAGCUU-GUAGUUGGCaCUGCcG- -5'
17082 3' -48.9 NC_004333.2 + 22048 0.68 0.917805
Target:  5'- cGCGgg-CGGACA--GAUCGUGcACGGCg -3'
miRNA:   3'- -UGCuaaGCUUGUagUUGGCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20573 0.67 0.928275
Target:  5'- gGCGcgUCGggUcgC-GCCGUGguguuucugcaggcGCGGCu -3'
miRNA:   3'- -UGCuaAGCuuGuaGuUGGCAC--------------UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40708 0.66 0.970489
Target:  5'- cCGAUcgccgCGAuCGUC-ACCGgcGGCGGCa -3'
miRNA:   3'- uGCUAa----GCUuGUAGuUGGCa-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8694 0.72 0.748511
Target:  5'- cACGg--CGAACGUgcCGACCGUGACGccGCu -3'
miRNA:   3'- -UGCuaaGCUUGUA--GUUGGCACUGC--CG- -5'
17082 3' -48.9 NC_004333.2 + 32080 0.71 0.76992
Target:  5'- gACGAUcgcauagaUCG-GCGUCGGCgcguucaGUGACGGCa -3'
miRNA:   3'- -UGCUA--------AGCuUGUAGUUGg------CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20996 0.7 0.820516
Target:  5'- uGCGuUUCGAGCGcguggCAGCCGUcACGGg -3'
miRNA:   3'- -UGCuAAGCUUGUa----GUUGGCAcUGCCg -5'
17082 3' -48.9 NC_004333.2 + 42216 0.7 0.820516
Target:  5'- uGCGGcUCG-ACuUCGACCGcacGACGGCc -3'
miRNA:   3'- -UGCUaAGCuUGuAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38440 0.69 0.865741
Target:  5'- cCGcgUCGAACuuuGUCGAuCCGUGGCGcgacGCg -3'
miRNA:   3'- uGCuaAGCUUG---UAGUU-GGCACUGC----CG- -5'
17082 3' -48.9 NC_004333.2 + 8635 0.68 0.904379
Target:  5'- cGCGAcgUCGAGCucggcgCGGCgcccggcuugcuCGUGACGGUg -3'
miRNA:   3'- -UGCUa-AGCUUGua----GUUG------------GCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11053 0.68 0.897222
Target:  5'- cCGggUCGAAUucUCGACCGccgGGCGuGCg -3'
miRNA:   3'- uGCuaAGCUUGu-AGUUGGCa--CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 32297 0.69 0.860641
Target:  5'- gGCGAUgUCGAcguGCGUCAgcaggucggucacgaGCgCGUGcACGGCu -3'
miRNA:   3'- -UGCUA-AGCU---UGUAGU---------------UG-GCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15533 0.74 0.647291
Target:  5'- cGCGAUguuagCGGGCAUCGagcagccccAUCGUGGCGaGCu -3'
miRNA:   3'- -UGCUAa----GCUUGUAGU---------UGGCACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 15615 0.68 0.897222
Target:  5'- cACGGUUucggCGAACGUCGuGCCGU--UGGCg -3'
miRNA:   3'- -UGCUAA----GCUUGUAGU-UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38286 0.72 0.715464
Target:  5'- gACGAgaUCGAuGCAcgcgCGACCGUGcacGCGGCg -3'
miRNA:   3'- -UGCUa-AGCU-UGUa---GUUGGCAC---UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 46129 0.7 0.830035
Target:  5'- uACGGcaagUUCGAGgAUCAcGCCGUGAUcGCa -3'
miRNA:   3'- -UGCU----AAGCUUgUAGU-UGGCACUGcCG- -5'
17082 3' -48.9 NC_004333.2 + 11811 0.68 0.904379
Target:  5'- uACGAcgCGGcCAUCAG-CGcGACGGCg -3'
miRNA:   3'- -UGCUaaGCUuGUAGUUgGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 44637 0.68 0.924069
Target:  5'- cCGAgUUCGAaauggacaugcGCAUCAACCaucGCGGCa -3'
miRNA:   3'- uGCU-AAGCU-----------UGUAGUUGGcacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 28220 0.72 0.748511
Target:  5'- uGCGcgUcCGGgcGCGUCAcggugACCGUGACGcGCg -3'
miRNA:   3'- -UGCuaA-GCU--UGUAGU-----UGGCACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 8967 0.71 0.780399
Target:  5'- cGCGGgcUGGAuCGUgGGCCGUGcGCGGCg -3'
miRNA:   3'- -UGCUaaGCUU-GUAgUUGGCAC-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.