miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 44637 0.68 0.924069
Target:  5'- cCGAgUUCGAaauggacaugcGCAUCAACCaucGCGGCa -3'
miRNA:   3'- uGCU-AAGCU-----------UGUAGUUGGcacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20996 0.7 0.820516
Target:  5'- uGCGuUUCGAGCGcguggCAGCCGUcACGGg -3'
miRNA:   3'- -UGCuAAGCUUGUa----GUUGGCAcUGCCg -5'
17082 3' -48.9 NC_004333.2 + 11350 0.66 0.967113
Target:  5'- cGCGGUUCGu-CGUCAccuuGCCGcgcucGACGaGCu -3'
miRNA:   3'- -UGCUAAGCuuGUAGU----UGGCa----CUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 19930 0.66 0.955366
Target:  5'- gACGA--CGAGCGc--GCCG-GGCGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUaguUGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 20573 0.67 0.928275
Target:  5'- gGCGcgUCGggUcgC-GCCGUGguguuucugcaggcGCGGCu -3'
miRNA:   3'- -UGCuaAGCuuGuaGuUGGCAC--------------UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8967 0.71 0.780399
Target:  5'- cGCGGgcUGGAuCGUgGGCCGUGcGCGGCg -3'
miRNA:   3'- -UGCUaaGCUU-GUAgUUGGCAC-UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 10113 0.66 0.955366
Target:  5'- cGCGAUUCGGAUcgaGGCCcagGuCGGCa -3'
miRNA:   3'- -UGCUAAGCUUGuagUUGGca-CuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32080 0.71 0.76992
Target:  5'- gACGAUcgcauagaUCG-GCGUCGGCgcguucaGUGACGGCa -3'
miRNA:   3'- -UGCUA--------AGCuUGUAGUUGg------CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 8694 0.72 0.748511
Target:  5'- cACGg--CGAACGUgcCGACCGUGACGccGCu -3'
miRNA:   3'- -UGCuaaGCUUGUA--GUUGGCACUGC--CG- -5'
17082 3' -48.9 NC_004333.2 + 15615 0.68 0.897222
Target:  5'- cACGGUUucggCGAACGUCGuGCCGU--UGGCg -3'
miRNA:   3'- -UGCUAA----GCUUGUAGU-UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 10700 0.67 0.930032
Target:  5'- uCGGUUCGAcGCuguUCGACgCGauUGACGGUc -3'
miRNA:   3'- uGCUAAGCU-UGu--AGUUG-GC--ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 39653 0.67 0.950888
Target:  5'- -gGAcgCGAACuUCAcggucGCCGaGGCGGCg -3'
miRNA:   3'- ugCUaaGCUUGuAGU-----UGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 23102 0.66 0.955366
Target:  5'- ----aUCGGuuGCGUCGGCUGaacGGCGGCa -3'
miRNA:   3'- ugcuaAGCU--UGUAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 28757 0.66 0.959558
Target:  5'- cGCGAgcgccGCGUCGACCGcgcgggucgcGGCGGCg -3'
miRNA:   3'- -UGCUaagcuUGUAGUUGGCa---------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24821 0.66 0.967113
Target:  5'- cGCGAccugcacgUUGAaguagACcUCGACCGUcGGCGGCc -3'
miRNA:   3'- -UGCUa-------AGCU-----UGuAGUUGGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 11811 0.68 0.904379
Target:  5'- uACGAcgCGGcCAUCAG-CGcGACGGCg -3'
miRNA:   3'- -UGCUaaGCUuGUAGUUgGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 42216 0.7 0.820516
Target:  5'- uGCGGcUCG-ACuUCGACCGcacGACGGCc -3'
miRNA:   3'- -UGCUaAGCuUGuAGUUGGCa--CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38440 0.69 0.865741
Target:  5'- cCGcgUCGAACuuuGUCGAuCCGUGGCGcgacGCg -3'
miRNA:   3'- uGCuaAGCUUG---UAGUU-GGCACUGC----CG- -5'
17082 3' -48.9 NC_004333.2 + 2841 0.71 0.800842
Target:  5'- cACGGUcgugaCGAACG-CGACCGgcacGGCGGCc -3'
miRNA:   3'- -UGCUAa----GCUUGUaGUUGGCa---CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40315 0.68 0.904379
Target:  5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3'
miRNA:   3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.