Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 42634 | 0.66 | 0.967113 |
Target: 5'- aACGAcgCGGAUAa-GGCCGUgaugcccguuGACGGCg -3' miRNA: 3'- -UGCUaaGCUUGUagUUGGCA----------CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38059 | 0.68 | 0.926491 |
Target: 5'- aGCGAcgCGGGCAgugcuuggagaauguUCGccACCGUGacGCGGCc -3' miRNA: 3'- -UGCUaaGCUUGU---------------AGU--UGGCAC--UGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 31688 | 0.67 | 0.930032 |
Target: 5'- cGCGcg-CGGccACAgCGGCCGaGACGGCg -3' miRNA: 3'- -UGCuaaGCU--UGUaGUUGGCaCUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 32416 | 0.66 | 0.959558 |
Target: 5'- cACGcuaUCGGGCAgcgacccggCAGCCGUGcACGcGCu -3' miRNA: 3'- -UGCua-AGCUUGUa--------GUUGGCAC-UGC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 25527 | 0.66 | 0.959152 |
Target: 5'- gACGAUccCGggUGUCGucguaaccggcacGCCcggcGUGACGGCc -3' miRNA: 3'- -UGCUAa-GCuuGUAGU-------------UGG----CACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 30170 | 0.71 | 0.800842 |
Target: 5'- cGCGggUCGcGCAUCGACgCGUuccGuCGGCg -3' miRNA: 3'- -UGCuaAGCuUGUAGUUG-GCA---CuGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 43487 | 0.68 | 0.924069 |
Target: 5'- cCGAccCGAGCGUCuGCCugcgcgGGCGGCu -3' miRNA: 3'- uGCUaaGCUUGUAGuUGGca----CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 24811 | 0.68 | 0.917805 |
Target: 5'- cGCGuucgUGAGCGgcuucUCGACCGaUGACGGg -3' miRNA: 3'- -UGCuaa-GCUUGU-----AGUUGGC-ACUGCCg -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 21183 | 0.7 | 0.810781 |
Target: 5'- gGCGcucgCGAACAUCAGaCC--GACGGCg -3' miRNA: 3'- -UGCuaa-GCUUGUAGUU-GGcaCUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 25918 | 0.7 | 0.820516 |
Target: 5'- -aGAUUC--GCAUCGACCGccUGACGcGCc -3' miRNA: 3'- ugCUAAGcuUGUAGUUGGC--ACUGC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38484 | 0.7 | 0.820516 |
Target: 5'- aGCGucUCGAucgcCGUCuuGACCGUGGcCGGCg -3' miRNA: 3'- -UGCuaAGCUu---GUAG--UUGGCACU-GCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 9888 | 0.7 | 0.826254 |
Target: 5'- gGCGAcgCGGACGggcaggcauacgaCGGCCGgaUGACGGCu -3' miRNA: 3'- -UGCUaaGCUUGUa------------GUUGGC--ACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 2079 | 0.7 | 0.830035 |
Target: 5'- gUGAcgUCGGGCAUCAuCCGcGcCGGCg -3' miRNA: 3'- uGCUa-AGCUUGUAGUuGGCaCuGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 40449 | 0.69 | 0.865741 |
Target: 5'- -gGGUUCGA--GUCGGCCGc-GCGGCg -3' miRNA: 3'- ugCUAAGCUugUAGUUGGCacUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 21090 | 0.7 | 0.839327 |
Target: 5'- cGCGGccacuuCGUCGcCCGUGACGGCu -3' miRNA: 3'- -UGCUaagcuuGUAGUuGGCACUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 15660 | 0.69 | 0.88204 |
Target: 5'- cCGA--CGAGCAgcgugCGACCGUGAuCGaGCa -3' miRNA: 3'- uGCUaaGCUUGUa----GUUGGCACU-GC-CG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 15088 | 0.69 | 0.88204 |
Target: 5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3' miRNA: 3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 5853 | 0.69 | 0.88204 |
Target: 5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3' miRNA: 3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 38644 | 0.69 | 0.889774 |
Target: 5'- cACGAUgcccgCGAACAgcagcugugUCGuuGCCGUgagcgcgucgGACGGCa -3' miRNA: 3'- -UGCUAa----GCUUGU---------AGU--UGGCA----------CUGCCG- -5' |
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17082 | 3' | -48.9 | NC_004333.2 | + | 40315 | 0.68 | 0.904379 |
Target: 5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3' miRNA: 3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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