miRNA display CGI


Results 61 - 75 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 6671 0.71 0.780399
Target:  5'- uGCGGcgcUGGGCggCGcGCCGUGGCGGCg -3'
miRNA:   3'- -UGCUaa-GCUUGuaGU-UGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 33441 0.71 0.790711
Target:  5'- cGCGA-UCGGGCAgCAGgCGUuccacGACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUgGCA-----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 30170 0.71 0.800842
Target:  5'- cGCGggUCGcGCAUCGACgCGUuccGuCGGCg -3'
miRNA:   3'- -UGCuaAGCuUGUAGUUG-GCA---CuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 2841 0.71 0.800842
Target:  5'- cACGGUcgugaCGAACG-CGACCGgcacGGCGGCc -3'
miRNA:   3'- -UGCUAa----GCUUGUaGUUGGCa---CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 25918 0.7 0.820516
Target:  5'- -aGAUUC--GCAUCGACCGccUGACGcGCc -3'
miRNA:   3'- ugCUAAGcuUGUAGUUGGC--ACUGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 21183 0.7 0.810781
Target:  5'- gGCGcucgCGAACAUCAGaCC--GACGGCg -3'
miRNA:   3'- -UGCuaa-GCUUGUAGUU-GGcaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38484 0.7 0.820516
Target:  5'- aGCGucUCGAucgcCGUCuuGACCGUGGcCGGCg -3'
miRNA:   3'- -UGCuaAGCUu---GUAG--UUGGCACU-GCCG- -5'
17082 3' -48.9 NC_004333.2 + 9888 0.7 0.826254
Target:  5'- gGCGAcgCGGACGggcaggcauacgaCGGCCGgaUGACGGCu -3'
miRNA:   3'- -UGCUaaGCUUGUa------------GUUGGC--ACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 2079 0.7 0.830035
Target:  5'- gUGAcgUCGGGCAUCAuCCGcGcCGGCg -3'
miRNA:   3'- uGCUa-AGCUUGUAGUuGGCaCuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 21090 0.7 0.839327
Target:  5'- cGCGGccacuuCGUCGcCCGUGACGGCu -3'
miRNA:   3'- -UGCUaagcuuGUAGUuGGCACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 40449 0.69 0.865741
Target:  5'- -gGGUUCGA--GUCGGCCGc-GCGGCg -3'
miRNA:   3'- ugCUAAGCUugUAGUUGGCacUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 15660 0.69 0.88204
Target:  5'- cCGA--CGAGCAgcgugCGACCGUGAuCGaGCa -3'
miRNA:   3'- uGCUaaGCUUGUa----GUUGGCACU-GC-CG- -5'
17082 3' -48.9 NC_004333.2 + 15088 0.69 0.88204
Target:  5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3'
miRNA:   3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 5853 0.69 0.88204
Target:  5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3'
miRNA:   3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5'
17082 3' -48.9 NC_004333.2 + 21608 0.66 0.970489
Target:  5'- gGCGAUUCGGACGau-ACgCGUucGACGcGCc -3'
miRNA:   3'- -UGCUAAGCUUGUaguUG-GCA--CUGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.