miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 3' -48.9 NC_004333.2 + 15088 0.69 0.88204
Target:  5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGCc -3'
miRNA:   3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 43487 0.68 0.924069
Target:  5'- cCGAccCGAGCGUCuGCCugcgcgGGCGGCu -3'
miRNA:   3'- uGCUaaGCUUGUAGuUGGca----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24811 0.68 0.917805
Target:  5'- cGCGuucgUGAGCGgcuucUCGACCGaUGACGGg -3'
miRNA:   3'- -UGCuaa-GCUUGU-----AGUUGGC-ACUGCCg -5'
17082 3' -48.9 NC_004333.2 + 40315 0.68 0.904379
Target:  5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3'
miRNA:   3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5'
17082 3' -48.9 NC_004333.2 + 34812 0.68 0.897222
Target:  5'- cGCGGgcggCGucACGUCAACUaagGGCGGCa -3'
miRNA:   3'- -UGCUaa--GCu-UGUAGUUGGca-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 24920 0.68 0.897222
Target:  5'- uGCGGUUCGug---CGGCCGccGACGGUc -3'
miRNA:   3'- -UGCUAAGCuuguaGUUGGCa-CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 23520 0.69 0.889774
Target:  5'- uGCGGUcaacccCGAuACGUCGACCGauccggccGGCGGCg -3'
miRNA:   3'- -UGCUAa-----GCU-UGUAGUUGGCa-------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38644 0.69 0.889774
Target:  5'- cACGAUgcccgCGAACAgcagcugugUCGuuGCCGUgagcgcgucgGACGGCa -3'
miRNA:   3'- -UGCUAa----GCUUGU---------AGU--UGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 5853 0.69 0.88204
Target:  5'- gACGGggCGAAUgcgagaggcuAUCGACCGUGACa-- -3'
miRNA:   3'- -UGCUaaGCUUG----------UAGUUGGCACUGccg -5'
17082 3' -48.9 NC_004333.2 + 8762 0.68 0.924069
Target:  5'- cACGG-UCGGcACGUUcGCCGUgcugaacgccGACGGCa -3'
miRNA:   3'- -UGCUaAGCU-UGUAGuUGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 38059 0.68 0.926491
Target:  5'- aGCGAcgCGGGCAgugcuuggagaauguUCGccACCGUGacGCGGCc -3'
miRNA:   3'- -UGCUaaGCUUGU---------------AGU--UGGCAC--UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 31688 0.67 0.930032
Target:  5'- cGCGcg-CGGccACAgCGGCCGaGACGGCg -3'
miRNA:   3'- -UGCuaaGCU--UGUaGUUGGCaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 34024 0.66 0.970489
Target:  5'- cGCGA--CGGGCAUCAcgguGCCGUc-UGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUAGU----UGGCAcuGCCG- -5'
17082 3' -48.9 NC_004333.2 + 42634 0.66 0.967113
Target:  5'- aACGAcgCGGAUAa-GGCCGUgaugcccguuGACGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUagUUGGCA----------CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 17083 0.66 0.959558
Target:  5'- cACGAgUCGAGCG-CGGC---GACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUGgcaCUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32416 0.66 0.959558
Target:  5'- cACGcuaUCGGGCAgcgacccggCAGCCGUGcACGcGCu -3'
miRNA:   3'- -UGCua-AGCUUGUa--------GUUGGCAC-UGC-CG- -5'
17082 3' -48.9 NC_004333.2 + 25527 0.66 0.959152
Target:  5'- gACGAUccCGggUGUCGucguaaccggcacGCCcggcGUGACGGCc -3'
miRNA:   3'- -UGCUAa-GCuuGUAGU-------------UGG----CACUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 27589 0.66 0.954493
Target:  5'- uGCGAUcgacacgUCGAucgcuuACAUCAACCGcacgcaaUGgaucGCGGCg -3'
miRNA:   3'- -UGCUA-------AGCU------UGUAGUUGGC-------AC----UGCCG- -5'
17082 3' -48.9 NC_004333.2 + 32059 0.67 0.935694
Target:  5'- cGCGcuaUCGGACuaucCGACCGagcagGGCGGCu -3'
miRNA:   3'- -UGCua-AGCUUGua--GUUGGCa----CUGCCG- -5'
17082 3' -48.9 NC_004333.2 + 17599 0.67 0.935694
Target:  5'- cGCGAUcgcuUCGGACAgugCGACCGgcuGCaGCa -3'
miRNA:   3'- -UGCUA----AGCUUGUa--GUUGGCac-UGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.