Results 21 - 40 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 21608 | 0.66 | 0.970489 |
Target: 5'- gGCGAUUCGGACGau-ACgCGUucGACGcGCc -3' miRNA: 3'- -UGCUAAGCUUGUaguUG-GCA--CUGC-CG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 34024 | 0.66 | 0.970489 |
Target: 5'- cGCGA--CGGGCAUCAcgguGCCGUc-UGGCg -3' miRNA: 3'- -UGCUaaGCUUGUAGU----UGGCAcuGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 42634 | 0.66 | 0.967113 |
Target: 5'- aACGAcgCGGAUAa-GGCCGUgaugcccguuGACGGCg -3' miRNA: 3'- -UGCUaaGCUUGUagUUGGCA----------CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 17083 | 0.66 | 0.959558 |
Target: 5'- cACGAgUCGAGCG-CGGC---GACGGCg -3' miRNA: 3'- -UGCUaAGCUUGUaGUUGgcaCUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 32416 | 0.66 | 0.959558 |
Target: 5'- cACGcuaUCGGGCAgcgacccggCAGCCGUGcACGcGCu -3' miRNA: 3'- -UGCua-AGCUUGUa--------GUUGGCAC-UGC-CG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 25527 | 0.66 | 0.959152 |
Target: 5'- gACGAUccCGggUGUCGucguaaccggcacGCCcggcGUGACGGCc -3' miRNA: 3'- -UGCUAa-GCuuGUAGU-------------UGG----CACUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 27589 | 0.66 | 0.954493 |
Target: 5'- uGCGAUcgacacgUCGAucgcuuACAUCAACCGcacgcaaUGgaucGCGGCg -3' miRNA: 3'- -UGCUA-------AGCU------UGUAGUUGGC-------AC----UGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 32059 | 0.67 | 0.935694 |
Target: 5'- cGCGcuaUCGGACuaucCGACCGagcagGGCGGCu -3' miRNA: 3'- -UGCua-AGCUUGua--GUUGGCa----CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 17599 | 0.67 | 0.935694 |
Target: 5'- cGCGAUcgcuUCGGACAgugCGACCGgcuGCaGCa -3' miRNA: 3'- -UGCUA----AGCUUGUa--GUUGGCac-UGcCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 31688 | 0.67 | 0.930032 |
Target: 5'- cGCGcg-CGGccACAgCGGCCGaGACGGCg -3' miRNA: 3'- -UGCuaaGCU--UGUaGUUGGCaCUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 24920 | 0.68 | 0.897222 |
Target: 5'- uGCGGUUCGug---CGGCCGccGACGGUc -3' miRNA: 3'- -UGCUAAGCuuguaGUUGGCa-CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 34812 | 0.68 | 0.897222 |
Target: 5'- cGCGGgcggCGucACGUCAACUaagGGCGGCa -3' miRNA: 3'- -UGCUaa--GCu-UGUAGUUGGca-CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 40315 | 0.68 | 0.904379 |
Target: 5'- -aGGUUCGAAuuCGUCGAUCGguUGGcCGGCc -3' miRNA: 3'- ugCUAAGCUU--GUAGUUGGC--ACU-GCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 24811 | 0.68 | 0.917805 |
Target: 5'- cGCGuucgUGAGCGgcuucUCGACCGaUGACGGg -3' miRNA: 3'- -UGCuaa-GCUUGU-----AGUUGGC-ACUGCCg -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 43487 | 0.68 | 0.924069 |
Target: 5'- cCGAccCGAGCGUCuGCCugcgcgGGCGGCu -3' miRNA: 3'- uGCUaaGCUUGUAGuUGGca----CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 8762 | 0.68 | 0.924069 |
Target: 5'- cACGG-UCGGcACGUUcGCCGUgcugaacgccGACGGCa -3' miRNA: 3'- -UGCUaAGCU-UGUAGuUGGCA----------CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 38059 | 0.68 | 0.926491 |
Target: 5'- aGCGAcgCGGGCAgugcuuggagaauguUCGccACCGUGacGCGGCc -3' miRNA: 3'- -UGCUaaGCUUGU---------------AGU--UGGCAC--UGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 40708 | 0.66 | 0.970489 |
Target: 5'- cCGAUcgccgCGAuCGUC-ACCGgcGGCGGCa -3' miRNA: 3'- uGCUAa----GCUuGUAGuUGGCa-CUGCCG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 15533 | 0.74 | 0.647291 |
Target: 5'- cGCGAUguuagCGGGCAUCGagcagccccAUCGUGGCGaGCu -3' miRNA: 3'- -UGCUAa----GCUUGUAGU---------UGGCACUGC-CG- -5' |
|||||||
17082 | 3' | -48.9 | NC_004333.2 | + | 38286 | 0.72 | 0.715464 |
Target: 5'- gACGAgaUCGAuGCAcgcgCGACCGUGcacGCGGCg -3' miRNA: 3'- -UGCUa-AGCU-UGUa---GUUGGCAC---UGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home