miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 5' -57 NC_004333.2 + 13379 0.66 0.613598
Target:  5'- -uGCGUGUCGuuGAGCcguauugggUGACGC-CGAa -3'
miRNA:   3'- guUGCGCAGCcgCUCG---------ACUGCGuGCU- -5'
17082 5' -57 NC_004333.2 + 20483 0.66 0.613598
Target:  5'- uUAGCGUccCGGCG-GCUGcCGCGCa- -3'
miRNA:   3'- -GUUGCGcaGCCGCuCGACuGCGUGcu -5'
17082 5' -57 NC_004333.2 + 45030 0.66 0.613598
Target:  5'- -cGCGCGU-GGCGcuGGC-GGCGCGCa- -3'
miRNA:   3'- guUGCGCAgCCGC--UCGaCUGCGUGcu -5'
17082 5' -57 NC_004333.2 + 12792 0.66 0.613598
Target:  5'- gUAACGCGUUGcaGC-AGCUGAUGaACGAu -3'
miRNA:   3'- -GUUGCGCAGC--CGcUCGACUGCgUGCU- -5'
17082 5' -57 NC_004333.2 + 20580 0.66 0.613598
Target:  5'- gCGGCGCGgCGGCGgccggcAGCgGuuGCGCGGc -3'
miRNA:   3'- -GUUGCGCaGCCGC------UCGaCugCGUGCU- -5'
17082 5' -57 NC_004333.2 + 20637 0.66 0.612505
Target:  5'- uCGACGCGagcgucgcaaCGGCGcugcgccaguggcAGgaGGCGCACGGg -3'
miRNA:   3'- -GUUGCGCa---------GCCGC-------------UCgaCUGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 12455 0.66 0.602686
Target:  5'- uGGCGCGcCGggcggggcGCGGGCgGGCGCuACGGc -3'
miRNA:   3'- gUUGCGCaGC--------CGCUCGaCUGCG-UGCU- -5'
17082 5' -57 NC_004333.2 + 39213 0.66 0.602686
Target:  5'- -cGCGCaucccGUCGGcCGAGCUG-CGUGCa- -3'
miRNA:   3'- guUGCG-----CAGCC-GCUCGACuGCGUGcu -5'
17082 5' -57 NC_004333.2 + 38608 0.66 0.602686
Target:  5'- gAGCGCGUCGGaCGGcaacGCgu-CGCACa- -3'
miRNA:   3'- gUUGCGCAGCC-GCU----CGacuGCGUGcu -5'
17082 5' -57 NC_004333.2 + 3005 0.66 0.591799
Target:  5'- cCGGCGCGUCcgccGCGAcGUa-GCGCGCGAa -3'
miRNA:   3'- -GUUGCGCAGc---CGCU-CGacUGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 17704 0.66 0.591799
Target:  5'- gAACGUGUCGGCcacGGCaccgGGCGCGgcCGGc -3'
miRNA:   3'- gUUGCGCAGCCGc--UCGa---CUGCGU--GCU- -5'
17082 5' -57 NC_004333.2 + 13834 0.66 0.591799
Target:  5'- -cACGC--CGcGCGAGC-GGCGCGCGGc -3'
miRNA:   3'- guUGCGcaGC-CGCUCGaCUGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 47612 0.66 0.591799
Target:  5'- -uGCGCGUCGcCGAGaugGGCgGCACGu -3'
miRNA:   3'- guUGCGCAGCcGCUCga-CUG-CGUGCu -5'
17082 5' -57 NC_004333.2 + 25943 0.66 0.590713
Target:  5'- gCGGCGCGaugcCGGCGGccaguacGC-GGCGCugGAa -3'
miRNA:   3'- -GUUGCGCa---GCCGCU-------CGaCUGCGugCU- -5'
17082 5' -57 NC_004333.2 + 3115 0.66 0.580946
Target:  5'- uCAACG-G-CGGCcAGCUGcCGUACGAu -3'
miRNA:   3'- -GUUGCgCaGCCGcUCGACuGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 7941 0.66 0.570135
Target:  5'- gGACGCGauggGGCGAGCgcgaGCugGAa -3'
miRNA:   3'- gUUGCGCag--CCGCUCGacugCGugCU- -5'
17082 5' -57 NC_004333.2 + 22001 0.66 0.570135
Target:  5'- --uUGCGUCGGCGcGaaucaGCGCGCGGg -3'
miRNA:   3'- guuGCGCAGCCGCuCgac--UGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 19936 0.67 0.559374
Target:  5'- gAGCGCGccgggCGGCGAGCc-GC-CGCGAg -3'
miRNA:   3'- gUUGCGCa----GCCGCUCGacUGcGUGCU- -5'
17082 5' -57 NC_004333.2 + 7423 0.67 0.559374
Target:  5'- uCGACGCG-CGGCgcccaGAGCUGcACGagACGGc -3'
miRNA:   3'- -GUUGCGCaGCCG-----CUCGAC-UGCg-UGCU- -5'
17082 5' -57 NC_004333.2 + 19966 0.67 0.559374
Target:  5'- aCGGCGCGgauGGCccaGAGCUGcugaGCGCGGg -3'
miRNA:   3'- -GUUGCGCag-CCG---CUCGACug--CGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.